ArchSchema protocols

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description
ArchSchema computational protocol

ArchSchema specifications

Information


Unique identifier OMICS_21641
Name ArchSchema
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Additional information


http://www.ebi.ac.uk/Tools/archschema/documentation.html

Information


Unique identifier OMICS_21641
Name ArchSchema
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Requirements
JRE
Maintained Yes

Versioning


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Maintainer


This tool is not available anymore.

Additional information


http://www.ebi.ac.uk/Tools/archschema/documentation.html

Publication for ArchSchema

ArchSchema IN pipeline

2012
PMCID: 3291543
PMID: 22396634
DOI: 10.1371/journal.pcbi.1002403

[…] to constitute a domain are checked against pfam and if a non-overlapping pfam domain is found then it is included in the mda. sequences with the same multi-domain architectures are clustered using archschema [26]. the sequences of each cluster are then aligned using mafft [43], and the alignment used to perform the phylogenetic analysis., some superfamilies can have an extremely large number […]

ArchSchema institution(s)
Division of Mathematical Biology, The National Institute for Medical Research, The Ridgeway, Mill Hill, London, UK; European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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