ArchSchema statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ArchSchema
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Tool usage distribution map

This map represents all the scientific publications referring to ArchSchema per scientific context
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Associated diseases

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Popular tool citations

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ArchSchema specifications

Information


Unique identifier OMICS_21641
Name ArchSchema
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Additional information


http://www.ebi.ac.uk/Tools/archschema/documentation.html

Information


Unique identifier OMICS_21641
Name ArchSchema
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability No
Requirements
JRE
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Additional information


http://www.ebi.ac.uk/Tools/archschema/documentation.html

Publication for ArchSchema

ArchSchema citations

 (3)
library_books

New Insights into the Phylogeny and Molecular Classification of Nicotinamide Mononucleotide Deamidases

2013
PLoS One
PMCID: 3855486
PMID: 24340054
DOI: 10.1371/journal.pone.0082705

[…] y two crystals in PDB (3KBQ and 2A9S) were carried out. A representative number of PncCs sequences (255 sequences) were cured by hand, and then, checked with the domains shown in Pfam database [] and ArchSchema [] to build a new phylogenetic tree of NMN deamidases (, ). Coloured rectangles next to enzyme names represent the domain composition of each enzyme in N-ter to C-ter direction (). The bran […]

library_books

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

2012
Nucleic Acids Res
PMCID: 3531114
PMID: 23203873
DOI: 10.1093/nar/gks1211

[…] links to resources established at the European Bioinformatics Institute (EBI) (section f) that display information on the different multi-domain contexts in which this domain superfamily is observed [archschema section (f), ]. Section (g), provides a link to the FunTree () resource displaying phylogenetic information for enzyme superfamilies in CATH. FunTree is the product of a collaboration betw […]

library_books

Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies

2012
PLoS Comput Biol
PMCID: 3291543
PMID: 22396634
DOI: 10.1371/journal.pcbi.1002403

[…] gh to constitute a domain are checked against Pfam and if a non-overlapping Pfam domain is found then it is included in the MDA. Sequences with the same multi-domain architectures are clustered using ArchSchema . The sequences of each cluster are then aligned using MAFFT , and the alignment used to perform the phylogenetic analysis. […]


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ArchSchema institution(s)
Division of Mathematical Biology, The National Institute for Medical Research, The Ridgeway, Mill Hill, London, UK; European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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