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ARCS-Motif specifications


Unique identifier OMICS_24607
Name ARCS-Motif
Alternative names Aggregated Related Column Score Motif, Fast ARCS Motif Discovery
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Maintained No


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Publication for Aggregated Related Column Score Motif

ARCS-Motif citation


PePPER: a webserver for prediction of prokaryote promoter elements and regulons

BMC Genomics
PMCID: 3472324
PMID: 22747501
DOI: 10.1186/1471-2164-13-299

[…] nd RegPrecise []. Besides experimental proof for the existence of protein-DNA interaction, TFBS discovery algorithms have been developed to uncover conserved regions that might act as TFBSs (MEME [], ARCS-Motif [], GLAM2 [], W-AlignACE [], GIMSAN [], RankMotif++ [], GAME [], and Tmod []). This so-called motif mining is based on a collection of genes having a certain correlation. Gene-to-gene corre […]

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ARCS-Motif institution(s)
Department of Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH, USA
ARCS-Motif funding source(s)
Supported by NSF-0551693 grant (partial); Case Presidential Research Initiative award.

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