ARCS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ARCS

Tool usage distribution map

This map represents all the scientific publications referring to ARCS per scientific context
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Associated diseases


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ARCS specifications


Unique identifier OMICS_15092
Alternative name Assembly Roundup by Chromium Scaffolding
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data DNA alignment
Input format BAM
Output data A tab-separated value file listing all possible oriented sequence pairs, the number of supporting barcodes with gap sizes arbitrarily set at 10 bp.
Output format GV
Biological technology Illumina
Operating system Unix/Linux, Mac OS
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Boost, GCC, Autotools
Maintained Yes




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Publication for Assembly Roundup by Chromium Scaffolding

ARCS citations


The Genome of the Northern Sea Otter (Enhydra lutris kenyoni)

PMCID: 5748697
PMID: 29232880
DOI: 10.3390/genes8120379

[…] incremented at each iteration) [], using scaffolds from all three ABySS assemblies. Cobbler was used once more to automatically fill remaining gaps with ABySS contig sequences (same parameters). The Assembly Roundup by Chromium Scaffolding application (ARCS) was used to further contiguate the assembly using 10x genomics linked reads (version 1.0.1; ARCS parameters -s at 98, -c at 5, -l at 0, -d a […]


A life course approach to health: synergy with sustainable development goals

Bull World Health Organ
PMCID: 5791871
PMID: 29403099
DOI: 10.2471/BLT.17.198358

[…] erminants of health and the individual agency and collective actions required to ensure health and well-being throughout life. In , functional ability and intrinsic capacity are depicted as idealized arcs across the life course. Intrinsic capacity follows a biologically determined trajectory of physical and mental capacities. In contrast, functional ability can be optimized throughout life by a su […]

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ARCS institution(s)
BC Cancer Agency, Genome Sciences Centre, Vancouver, BC, Canada
ARCS funding source(s)
This work has been supported by the National Human Genome Research Institute of the National Institutes of Health (under award No. R01HG007182), with additional support provided by Genome Canada, Genome British Columbia, and the British Columbia Cancer Foundation.

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