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ARDB specifications

Information


Unique identifier OMICS_03171
Name ARDB
Alternative name Antibiotic Resistance Genes Database
Restrictions to use None
Maintained Yes

Publication for Antibiotic Resistance Genes Database

ARDB citations

 (43)
library_books

Draft Genome Sequence of Paucibacter aquatile CR182T, a Strain with Antimicrobial Activity Isolated from Freshwater of Nakdong River in South South Korea

2018
Genome Announc
PMCID: 5920192
PMID: 29700134
DOI: 10.1128/genomeA.00194-18

[…] e genome harbors 9 gene clusters involved in the biosynthesis of lantipeptide, hserlactone, bacteriocin, terpene, and a nonribosomal peptide synthetase (NRPS), a kind of amychelin. Analysis using the Antibiotic Resistance Genes Database (ARDB) () led to the identification of several genes (marB, mecR, pbp2b, catB2, bacA, smeD, and oprM) putatively involved in antibiotic resistance, some conferring […]

library_books

Comparative Genomic Analysis of a Clinical Isolate of Klebsiella quasipneumoniae subsp. similipneumoniae, a KPC 2 and OKP B 6 Beta Lactamases Producer Harboring Two Drug Resistance Plasmids from Southeast Brazil

2018
Front Microbiol
PMCID: 5820359
PMID: 29503635
DOI: 10.3389/fmicb.2018.00220

[…] RNA genes was carried out by RNAmmer (Lagesen et al., ).Further bioinformatics analyses included BLAST searches against AtlasT4SS database (Souza et al., )/Resfinder database (Zankari et al., )/ARDB-Antibiotic Resistance Genes Database (Liu and Pop, )/Comprehensive Antibiotic Resistance Database (Jia et al., ) and Virulence Factors database (VFDB) (Chen et al., ), which were performed for identif […]

call_split

Multidrug Resistant Escherichia albertii: Co occurrence of β Lactamase and MCR 1 Encoding Genes

2018
Front Microbiol
PMCID: 5820351
PMID: 29503643
DOI: 10.3389/fmicb.2018.00258
call_split See protocol

[…] hnology, Co., Ltd. (). The filtered reads were assembled to generate one contig without gaps using SMRT Analysis 2.3.0 (). The protein-coding sequences (CDSs) were predicted using GeneMarkS (). ARDB (Antibiotic Resistance Genes Database) was used to search for antimicrobial resistance genes ().The complete genome sequences of SP140150 isolate are available at GenBank under the accession numbers: C […]

library_books

Complete genome sequencing of the luminescent bacterium, Vibrio qinghaiensis sp. Q67 using PacBio technology

2018
Sci Data
PMCID: 5769541
PMID: 29337313
DOI: 10.1038/sdata.2017.205

[…] of proteins (COG), and protein families (Pfam). Additional annotation was carried out using the following databases: Pathogen Host Interactions (PHI), Virulence Factors of Pathogenic Bacteria (VFDB), Antibiotic Resistance Genes Database (ARDB), Carbohydrate-Active enZYmes (CAZy). Prophages were identified using the PHAge Search Tool (http://phast.wishartlab.com). Nr and GO annotation was carried o […]

call_split

Practical implications of erythromycin resistance gene diversity on surveillance and monitoring of resistance

2018
PMCID: 5939627
PMID: 29346541
DOI: 10.1093/femsec/fiy006
call_split See protocol

[…] HMM protein models for Fungene gene families “Resfam_ermA”, “Resfam_ermB” and “Resfam_ermC” (Version 8.8). Additionally, ermF gene nucleotide sequences were obtained from proteins listed in the ARDB-Antibiotic Resistance Genes Database (version 1.1, July 3, 2009) (Liu and Pop ) and associated with the annotation “ermF”. All erm-associated sequences were combined and clustered at 99% nucleotide si […]

library_books

Genomic comparisons of Streptococcus suis serotype 9 strains recovered from diseased pigs in Spain and Canada

2018
PMCID: 5759227
PMID: 29316972
DOI: 10.1186/s13567-017-0498-2

[…] 50% were identified to be same homology groups (HG) []. The Artemis comparison tool was used to visualize the compared data []. Antimicrobial gene-resistance analysis was carried out by searching the antibiotic resistance genes database []. A resistance gene was only regarded as a homolog in tested strains if it showed at least 80% identity in protein sequence across 80% of the length of the prote […]

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ARDB institution(s)
Center for Bioinformatics and Computational Biology and Department of Computer Science, University of Maryland, College Park, MD, USA

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