ARepA statistics

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Associated diseases

Associated diseases

ARepA specifications

Information


Unique identifier OMICS_24560
Name ARepA
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License MIT License
Computer skills Advanced
Version 0.9.8
Stability Stable
Requirements
Sleipnir
Maintained Yes

Taxon


  • Bacteria
    • Bacillus subtilis
    • Escherichia coli
  • Plants and Fungi
    • Saccharomyces cerevisiae
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

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Maintainer


  • person_outline Curtis Huttenhower <>

Additional information


http://huttenhower.sph.harvard.edu/arepa/tutorial http://huttenhower.sph.harvard.edu/arepa/manual

ARepA in publications

 (4)
PMCID: 5620628
PMID: 28698479
DOI: 10.3390/microorganisms5030037

[…] kefir symbiotic consortium combining three bioprotective lab species (l. plantarum, l. kefir, and lactococcus lactis subsp. lactis) that was able to extend shelf life of a maize food product called ‘arepa’ against a. flavus contamination []. the use of an association of antifungal strains each exhibiting antifungal activity towards different fungal targets may be a way to enlarge the antifungal […]

PMCID: 4831844
PMID: 27078000
DOI: 10.1371/journal.pcbi.1004820

[…] from the ncbi gene expression omnibus repository (geo) [] as identified in []. these comprised 14,617 individual conditions, to which we further added 18 human gene expression datasets identified by arepa [] as containing the phrase “prostate tumor” or “prostate cancer” in their metadata annotations (). all data acquisition, processing, and normalization were performed using arepa’s default […]

PMCID: 4493686
PMID: 26157642
DOI: 10.7717/peerj.791

[…] need to access and integrate diverse sources of experimental results, we developed an approach for reproducible processing of high-throughput and heterogeneous data. the system, implemented as the arepa (automated repository acquisition) software environment, enabled us to rapidly and systematically retrieve, integrate, and analyze large ‘omics datasets from multiple sources in a consistent […]

PMCID: 3162347
PMID: 21876685
DOI: 10.3402/fnr.v55i0.7074

[…] starch from an amorphous to a more crystalline state, which will increase enzyme resistance and reduce the rate of digestion (). in agreement with this, previous studies on high-amylose corn in arepa products indicated that the rs content influences not only the amount of unavailable starch but also the digestibility of available starch ()., in the present study test breads were prepared […]


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