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AREsite specifications

Information


Unique identifier OMICS_06125
Name AREsite
Restrictions to use None
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/AREsite

Taxon


  • Invertebrates
    • Caenorhabditis elegans
    • Drosophila melanogaster
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
  • Vertebrates
    • Danio rerio

Maintainer


  • person_outline Andrea Tanzer

Publications for AREsite

AREsite citations

 (4)
library_books

Novel Pathological Role of hnRNPA1 (Heterogeneous Nuclear Ribonucleoprotein A1) in Vascular Smooth Muscle Cell Function and Neointima Hyperplasia

2017
PMCID: 5660626
PMID: 28912364
DOI: 10.1161/ATVBAHA.117.310020

[…] the target mRNA turnover and translation. Interestingly, by using the prediction software RegRNA, A Regulatory RNA Motifs and Elements Finder (http://regrna.mbc.nctu.edu.tw/html/prediction.html), or AREsite2 (http://nibiru.tbi.univie.ac.at/AREsite2/welcome), we have identified several AREs within the 3′-UTR of IQGAP1. Importantly, one of such AREs (ATTTA) is adjacent with the reported hnRNPA1 bin […]

library_books

Posttranscriptional Regulation Controls Calretinin Expression in Malignant Pleural Mesothelioma

2017
Front Genet
PMCID: 5447031
PMID: 28611824
DOI: 10.3389/fgene.2017.00070

[…] experiments (CALB2-3′UTR). Multiple sequence alignment of CALB2-3′UTR across 100 vertebrates listed in the UCSC Genome Browser, indicated two conserved stretches within the CALB2-3′UTR (Figure ). The AREsite2 software () revealed a putative ARE motif (AUUUA) within the first stretch, and TargetScan7.1 software predicted two binding sites for the miR-30 family and one for miR-9, within the second c […]

library_books

Identification of novel post transcriptional features in olfactory receptor family mRNAs

2015
Nucleic Acids Res
PMCID: 4627058
PMID: 25908788
DOI: 10.1093/nar/gkv324

[…] go application (http://weblogo.berkeley.edu/) (). The 3′UTR sequences generated during the annotation were used to scan for AREs. We scanned the 3′UTR sequences for the following n-mers identified by AREsite (http://rna.tbi.univie.ac.at/cgi-bin/AREsite.cgi) (): AUUUA and WWAUUUAWW. W indicates either an adenine or uracil nucleotide. miRNA sites were discovered using TargetScan 6.0 (–). In brief, 9 […]

library_books

Scan for Motifs: a webserver for the analysis of post transcriptional regulatory elements in the 3′ untranslated regions (3′ UTRs) of mRNAs

2014
BMC Bioinformatics
PMCID: 4067372
PMID: 24909639
DOI: 10.1186/1471-2105-15-174

[…] in some computational analyses for proteins [] and miRNAs [].In many studies one specific gene of interest from a single species is being analysed. Recently developed systems: RegRNA 2.0 [], AURA [], ARESite [], and UTRdb [] have provided increasing support for this type of analysis. However, the analysis of sequence alignments, a representation of overlapping identified elements, E-value cutoff, […]

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AREsite institution(s)
Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria
AREsite funding source(s)
TUniversity of Vienna Research platform [323500]; Austrian Science Fund (FWF) [SFB F43]

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