Argo Genome Browser statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Argo Genome Browser
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Tool usage distribution map

This map represents all the scientific publications referring to Argo Genome Browser per scientific context
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Protocols

Argo Genome Browser specifications

Information


Unique identifier OMICS_00902
Name Argo Genome Browser
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
License GNU Lesser General Public License version 3.0
Computer skills Medium
Version 1.0.31
Stability No
Maintained No

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Documentation


Publication for Argo Genome Browser

Argo Genome Browser citations

 (11)
library_books

Omics data reveal the unusual asexual fruiting nature and secondary metabolic potentials of the medicinal fungus Cordyceps cicadae

2017
BMC Genomics
PMCID: 5577849
PMID: 28854898
DOI: 10.1186/s12864-017-4060-4

[…] sing the program TREE-PUZZLE []. For pairwise syntenic analysis of genome structures, the scaffolds of the paired genomes of C. cicadae, C. militaris and I. fumosorosea were oriented by MEGABLAST and Argo Genome Browser for dot plotting analysis []. Blast score ratio (BSR) analysis was conducted to compare the difference between the paired genomes []. The normalized pairs of BSR indices were visua […]

library_books

Molecular Characterization, Gene Evolution, and Expression Analysis of the Fructose 1, 6 bisphosphate Aldolase (FBA) Gene Family in Wheat (Triticum aestivum L.)

2017
Front Plant Sci
PMCID: 5470051
PMID: 28659962
DOI: 10.3389/fpls.2017.01030

[…] ory DNA elements in the promoter sequences (1.5-kb upstream of the 5′-UTR) of TaFBA genes were annotated with PlantCARE (http://bioinformatics.psb.ugent.be/webtools/plantcare/html/), and displayed in Argo Genome Browser v1.0.31 (http://www.broadinstitute.org/annotation/argo/). The exon-intron structure of the TaFBA genes was determined by aligning the cDNA sequences to the corresponding genomic se […]

library_books

Complete genome sequence of Propionibacterium freudenreichii DSM 20271T

2015
Stand Genomic Sci
PMCID: 4619572
PMID: 26500719
DOI: 10.1186/s40793-015-0082-1

[…] Genes were identified using Prodigal v2.50 tool [] with manual curation in ARGO Genome Browser []. The predicted genes were translated and functionally annotated with description lines, Gene Ontology (GO) classes and Enzyme Commission (EC) numbers with PANNZER program [] usi […]

library_books

Genome Wide Identification, Evolution and Expression Analysis of mTERF Gene Family in Maize

2014
PLoS One
PMCID: 3981765
PMID: 24718683
DOI: 10.1371/journal.pone.0094126

[…] d subjected to prediction of cis-acting regulatory DNA elements using PlantPAN with the transcription factors selected from rice, maize and Arabidopsis. The regulatory DNA elements were displayed in Argo Genome Browser v1.0.26 (http://www.broadinstitute.org/annotation/argo/). […]

library_books

Sequencing the genome of Marssonina brunnea reveals fungus poplar co evolution

2012
BMC Genomics
PMCID: 3484023
PMID: 22876864
DOI: 10.1186/1471-2164-13-382

[…] ea was performed independently with a combination of three gene prediction program, including GeneMark (v2.3), Augustus (v2.3.1), and Exonhunter. The gene models were selected and manually curated by Argo Genome Browser (v 1.0.31, http://www.broadinstitute.org/annotation/argo/). The gene models were aligned using BLASTP against the protein sequence of B. cinerea and S. sclerotiorum ( http://www.br […]

library_books

Genomic perspectives on the evolution of fungal entomopathogenicity in Beauveria bassiana

2012
Sci Rep
PMCID: 3387728
PMID: 22761991
DOI: 10.1038/srep00483

[…] For genome structure comparison of Bb and Cm, the scaffolds of both genomes were oriented by MEGABLAST for dot plotting and a pair-wise comparison with an Argo Genome Browser. A Blast Score Ratio (BSR) test was conducted to compare the differences between Bb, Cm and Mr genomes. The BSR index for each reference protein is calculated by dividing the query […]


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Argo Genome Browser funding source(s)
Supported by National Institute of Allergy and Infectious Diseases, National Institutes of Health.

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