Argot pipeline

Argot specifications

Information


Unique identifier OMICS_19922
Name Argot
Alternative names Annotation Retrieval of Gene Ontology Terms, Argot2
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data Some sequences.
Input format FASTA
Computer skills Basic
Version 2.5
Stability Stable
Maintained Yes

Maintainer


  • person_outline Stefano Toppo <>

Publication for Annotation Retrieval of Gene Ontology Terms

Argot IN pipeline

2016
PMCID: 4882050
PMID: 27228164
DOI: 10.1371/journal.pone.0156018

[…] ontology terms using the panther db [43,44], and the overrepresentation test was performed using a p-value < 0.05. those proteins that could not be annotated using panther were annotated with argot2 (total score > 200) [45–47]. the sub-cellular location of some proteins was predicted using cello v2.5 [48,49], and antigenicity was predicted using the kolaskar and tongaonkar antigenicity […]

Argot institution(s)
Department of Molecular Medicine, University of Padova, Padova, Italy; Istituto Agrario San Michele all’Adige Research and Innovation Centre, Foundation Edmund Mach, Trento, Italy
Argot funding source(s)
Supported by ‘‘progetto d’Ateneo” PRAT CPDA138081/13, Grant ‘‘assegno senior” and ‘‘bando giovani studiosi” GRIC13AAI9 from University of Padova.

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