ARK specifications


Unique identifier OMICS_10702
Name ARK
Alternative name Aggregation of Reads by K-means
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Parallelization OpenMP
Computer skills Advanced
Stability Stable
Requirements DNA_utils
Maintained Yes


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  • person_outline Saikat Chatterjee <>

Publication for Aggregation of Reads by K-means

ARK institution(s)
Department of Mathematics, Oregon State University, Corvallis, USA; Department of Communication Theory, KTH Royal Institute of Technology, Stockholm, Sweden; MRC Tropical Epidemiology Group, London School of Hygiene and Tropical Medicine, London, UK; Illumina Cambridge Ltd., Chesterford Research Park, Essex, UK; Department of Electronic and Electrical Engineering, University of Sheffield, Sheffield, UK; Department of Physics, Tsinghua University, Beijing, China; Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland
ARK funding source(s)
The Swedish Research Council Linnaeus Centre ACCESS; ERC grant 239784; the Academy of Finland Center of Excellence COIN; the Academy of Finland; the Scottish Government’s Rural and Environment Science and Analytical Services Division (RESAS); the UK MRC/DFID grant G1002369; Illumina Cambridge Ltd

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