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ARKdb specifications

Information


Unique identifier OMICS_04528
Name ARKdb
Restrictions to use None
Maintained Yes

Documentation


Maintainer


  • person_outline ARKdb Team

Publication for ARKdb

ARKdb citations

 (7)
library_books

Genome wide identification and expression analysis of E2 ubiquitin conjugating enzymes in tomato

2017
Sci Rep
PMCID: 5561181
PMID: 28819320
DOI: 10.1038/s41598-017-09121-4

[…] All the information related to position of each gene was retrieved from Sol genomics database. All identified genes were mapped on tomato chromosomes using ArkMap software (http://www.thearkdb.org/arkdb/). The 12 chromosomes of tomato genome were used from Ensembl plant database (http://plants.ensembl.org/index.html).The 1000 bp promoter sequences of all identified E2 ubiquitin enzyme […]

library_books

A Major Locus for Quantitatively Measured Shank Skin Color Traits in South Korean Native Chicken

2016
Asian-Australas J Anim Sci
PMCID: 5088374
PMID: 27383802
DOI: 10.5713/ajas.16.0183

[…] imals were genotyped with 171 informative DNA markers (132 microsatellites and 39 single nucleotide polymorphism [SNPs]) across the 26 autosomes and Z chromosome, selected from the Ark (http://www.thearkdb.org/arkdb/) and ENSEMBL (http://www.ensembl.org/Gallus_gallus/) databases. The polymerase chain reaction (PCR) amplifications of 132 microsatellite markers were performed with fluorescently labe […]

library_books

Variance Component Quantitative Trait Locus Analysis for Body Weight Traits in Purebred South Korean Native Chicken

2015
Asian-Australas J Anim Sci
PMCID: 4698688
PMID: 26732327
DOI: 10.5713/ajas.15.0193

[…] me) have been covered with the total map length of 2,729.4 centi Morgan (cM) and the average distance between markers was 19.64 cM. These MS markers were selected from the Ark Database (http://www.thearkdb.org/arkdb/) to be genotyped that previously described by . In addition, 8 SNP markers were selected from our candidate genes SNPs data that generated by direct sequencing and genotyped using PCR […]

library_books

Discrimination of South Korean Native Chicken Lines Using Fifteen Selected Microsatellite Markers

2013
Asian-Australas J Anim Sci
PMCID: 4093483
PMID: 25049793
DOI: 10.5713/ajas.2012.12469

[…] Initially, 150 MS markers were selected from the Ark Database (http://www.thearkdb.org/arkdb/) and were genotyped (). The primers used for genotyping were labeled with four fluorescence dyes (FAM, NED, VIC, PET) in forward primers. For the discrimination analysis of chicken li […]

library_books

An XML transfer schema for exchange of genomic and genetic mapping data: implementation as a web service in a Taverna workflow

2009
BMC Bioinformatics
PMCID: 2743669
PMID: 19682365
DOI: 10.1186/1471-2105-10-252

[…] sible using the tools currently available in Taverna.Figure demonstrates a more useful workflow created in Taverna, which is capable of finding sequence similarities to any chromosome represented in ArkDB. (The actual workflow is more detailed and uses a temporary file to reduce the number of calls to the external services by removing GenBank sequence ID redundancy, this diagram is available as a […]

library_books

A second generation radiation hybrid map to aid the assembly of the bovine genome sequence

2006
BMC Genomics
PMCID: 1636650
PMID: 17087818
DOI: 10.1186/1471-2164-7-283

[…] ComRad RH-map [] and the MARC 2004 linkage map [] and regions showing discrepancies examined in detail to identify the presence of problem markers. Marker positions on the maps are available from the ArkDB database []. […]

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ARKdb institution(s)
Roslin Institute, Roslin, Midlothian, Scotland, UK

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