ArkMAP statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

ArkMAP specifications

Information


Unique identifier OMICS_20036
Name ArkMAP
Software type Application/Script
Interface Web user interface
Restrictions to use None
Input data Some mapping data of any type.
Input format text, XML
Programming languages Java
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Trevor Paterson <>

Additional information


http://bioinformatics.roslin.ed.ac.uk/arkmap/help/

Publication for ArkMAP

ArkMAP in publications

 (4)
PMCID: 5583237
PMID: 28871114
DOI: 10.1038/s41598-017-10515-7

[…] here versus yu, et al., du, et al. and baranski, et al. were plotted using custom r scripts to confirm mapping position and illustrate genome synteny. an example linkage group (lg4) was drawn using arkmap to illustrate genome conservation., the assembled contig sequences and mapped raw reads generated within the current study have been submitted to genbank as a sra database (accession number: […]

PMCID: 5561181
PMID: 28819320
DOI: 10.1038/s41598-017-09121-4

[…] and cds were visualized using this tool., all the information related to position of each gene was retrieved from sol genomics database. all identified genes were mapped on tomato chromosomes using arkmap software (http://www.thearkdb.org/arkdb/). the 12 chromosomes of tomato genome were used from ensembl plant database (http://plants.ensembl.org/index.html)., the 1000 bp promoter sequences […]

PMCID: 5379710
PMID: 28376793
DOI: 10.1186/s12864-017-3666-x

[…] both exon/intron boundaries and phylogeny, the conserved gene orientation between the different chromosomal clusters of β-defensins of both sheep and cattle was investigated and illustrated via arkmap []., tissues were aseptically collected at a local abattoir from healthy rams (n = 5) within 30 min of slaughter. reproductive tracts were retrieved from post pubertal 12 month old suffolk […]

PMCID: 4927142
PMID: 27355585
DOI: 10.1371/journal.pone.0157739

[…] ()., we compared the entire ~7 mb human genomic region at 15q24 (72–79 mb, hg19) with the orthologous region in the rat genome (genome assembly rn5.0) to establish the blocks of the synteny, using arkmap []. we observed a complex evolutionary history of the region with several inversion and transposition events with some breaks of synteny at the regions harbouring the blocks segmental […]


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ArkMAP institution(s)
Division of Genetics and Genomics, The Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, UK
ArkMAP funding source(s)
Supported by Institute Strategic Grant funding from the Biotechnology and Biological Sciences Research Council.

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