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Publication for Armadillo
Evolution of UCP1 Transcriptional Regulatory Elements Across the Mammalian Phylogeny
[…] s occurring in the human. Some eutherian species displayed inactivated UCP1 genes with deletions of whole exons (e.g., Chinese pangolin; Manis pentacatyla, Javan pangolin; Manis javanica, nine-banded armadillo; Dasypus novemcinctus), or deletion of the entire gene (killer whale and bottlenose dolphin). The annotation techniques described above did not reveal the presence of a UCP1 enhancer in thes […]
Ab initio and homology based prediction of protein domains by recursive neural networks
[…] rotein domain dataset. The true boundary sizes here were enlarged to a minimum of 21 residues with a correct boundary being ± 10 from this true boundary; making our ± 20 boundary distance comparable. Armadillo  achieves a recall of 37% and a precision of 36% on boundaries with a simple amino acid propensity index. Again boundaries were considered correct for ± 20 residues.Finally, we directly co […]
Improving the performance of DomainDiscovery of protein domain boundary assignment using inter domain linker index
[…] more domains than predicted by structural methods. SSEP-Domain  performance was superior for one and two domain (85%) chains, but below DomainDiscovery performance for three or more domain chains. Armadillo's  tendency is to cut chains excessively as compared to other methods; which makes its performance inferior.PBP was calculated to determine the average percentage value for the six methods […]
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