Armatus specifications


Unique identifier OMICS_14191
Name Armatus
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A matrice file
Input format TXT
Operating system Unix/Linux
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 2.2
Stability Stable
C++, Boost
Maintained Yes



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  • person_outline Carl Kingsford <>

Publication for Armatus

Armatus in publications

PMCID: 5908957
PMID: 29706940
DOI: 10.3389/fmicb.2018.00719

[…] co-cultivated with m. aeruginosa., the growth of five algal strains (acutodesmus obliquus (sag 276-3a, formerly called: scenedesmus obliquus (turpin) kützing, s. acutus f. alternans), desmodesmus armatus (sag 276-4 d, formerly called: scenedesmus quadricauda, scenedesmus armatus chodat), chlorella vulgaris (sag 211-11b), oocystis marssonii (sag 257-1), and chloroidium saccharophilum (sag […]

PMCID: 5904380
PMID: 29674895
DOI: 10.3897/zookeys.746.22882

[…] plate on abdominal sternite viii narrow and slightly arched, occasionally disconnected (whereas pore plate with wider band which reaches lateral margins in comosus)., okajima , , psalidothrips armatus okajima, 1983: 6. , this species (fig. ) belongs to the group in which the fore tarsus is armed with a tooth in both sexes. recorded a male of this species in hainan, china. in this study, […]

PMCID: 5854262
PMID: 29543811
DOI: 10.1371/journal.pone.0193430

[…] goby (acanthogobius flavimanus; 10%), longjaw mudsucker (gillichthys mirabilis; 8%), pacific herring (clupea pallasii; 6%), northern anchovy (engraulis mordax; 4%), and staghorn sculpin (leptocottus armatus; 4%). at some colonies, the relative abundance and biomass of specific prey species changed over time. in general, the abundance and dry mass of silversides increased, whereas the abundance […]

PMCID: 5832150
PMID: 29483568
DOI: 10.1038/s41598-018-21635-z

[…] the genus dunatothrips show facultative pleometrosis, i.e. joint nesting. females of some species are solitary (e.g. d. gloius), but in others can be found in groups of up to 4 in d. skene, 8 in d. armatus, ~15–20 in d. aneurae– and >70 in d. vestitor., by far the best studied of these species is d. aneurae. in this species, reproductive females (“foundresses”) can be easily identified since […]

PMCID: 5910504
PMID: 29686798
DOI: 10.1016/j.csbj.2018.02.003

[…] for example, tadtool (as a python package) enables the direct export of tads called using a set of parameters for both directionality and insulation indices []. other tad callers, such as tadbit [], armatus [], and tadtree [], exhibit balanced performance for most parameters for experimental and simulated data. interaction callers, such as homer [] and hiccups, [,] yield the highest proportion […]

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Armatus institution(s)
Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA; Joint Carnegie Mellon University — University of Pittsburgh PhD Program in Computational Biology, Pittsburgh, PA, USA
Armatus funding source(s)
This work has been partially funded by National Science Foundation (CCF-1256087, CCF-1053918, and EF-0849899) and National Institutes of Health (R21AI085376, R01HG007104).

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