aRNApipe specifications


Unique identifier OMICS_12214
Name aRNApipe
Alternative name automated RNA-seq pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data An analysis configuration, and the samples to include in the analysis.
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Version 1.2
Stability Stable
Maintained Yes



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  • person_outline Richard M. Myers <>

Publication for automated RNA-seq pipeline

aRNApipe institution(s)
HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA; Rheumatology Research Group, Vall d'Hebron Hospital Research Institute, Barcelona, Spain; Department of Genetics, The University of Alabama at Birmingham, Birmingham, AL, USA
aRNApipe funding source(s)
Supported by funds from The HudsonAlpha Institute for Biotechnology; by the NIH-National Institute of General Medical Sciences Medical Scientist Training Program (5T32GM008361-21); and by the William J. Maier III Fellowship in Cancer Prevention (Prevent Cancer Foundation).

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