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aroma.light specifications

Information


Unique identifier OMICS_01998
Name aroma.light
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 3.10.0
Stability Stable
Requirements
stats, R(>=2.15.2), R.methodsS3(>=1.7.1), R.oo(>=1.21.0), R.utils(>=2.6.0), matrixStats(>=0.52.2), princurve(>=1.1-12)
Maintained Yes

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Documentation


aroma.light citations

 (16)
library_books

Tilapia waste flour as a natural nutritional replacer for bread: A consumer perspective

2018
PLoS One
PMCID: 5933794
PMID: 29723283
DOI: 10.1371/journal.pone.0196665

[…] and Dim 2: 10.89%) and separated the bread formulations into four groups (BTF0% and BTF2.5%; BTF5%; BTF10% and BTF15%; and BTF20%).BTF0% and BTF2.5% were characterized mainly by the attributes bread aroma, light color, and soft, while BTF5% was characterized by airy appearance, spongy, yeast aroma, yeast flavor, sticky in the teeth, and cream color; however, no difference (P < 0.05) was observed […]

library_books

MicroRNA 27a 5p regulation by promoter methylation and MYC signaling in prostate carcinogenesis

2018
PMCID: 5833437
PMID: 29415999
DOI: 10.1038/s41419-017-0241-y

[…] median background values from the median expression values obtained by FE, and data were subsequently log-transformed. Finally, all the data distribution was normalized by quantile function using the aroma-light bioconductor package. Differentially expressed miRNAs were identified using the T-test by multtest package. MiRNAs were considered to be of interest if P-values ≤ 0.01, fold-change ≥ 2.0 a […]

library_books

Analysis of the Bacterial Communities in Two Liquors of Soy Sauce Aroma as Revealed by High Throughput Sequencing of the 16S rRNA V4 Hypervariable Region

2017
Biomed Res Int
PMCID: 5350383
PMID: 28337455
DOI: 10.1155/2017/6271358

[…] produced through unique a fermentation process. It is typically produced from cereals, such as sorghum and rice, via the solid-state fermentation of grain. Chinese liquor has five main styles: strong aroma, light aroma, soy sauce aroma, sweet honey, and miscellaneous. Maotai and Guotai are Chinese liquors famous for their soy sauce aroma. Maotai-flavor liquor is as symbolic a drink in China as whi […]

library_books

MiR 21 as prognostic biomarker in head and neck squamous cell carcinoma patients undergoing an organ preservation protocol

2016
Oncotarget
PMCID: 5354780
PMID: 28039483
DOI: 10.18632/oncotarget.14253

[…] s. The median signals (gMedianSignal and gBGMedianSignal) were used. Following background subtraction and log2 scale transformation, the normalization was performed using the quantile method with the aroma light package []. Differentially expressed microRNAs were obtained by rank product analysis using the RankProd package [], considering p-values and positive false predictions (pfp) ≤ 0.05. Diffe […]

library_books

Gene expression profile of whole blood cells differs in pregnant women with positive screening and negative diagnosis for gestational diabetes

2016
PMCID: 5073650
PMID: 27843554
DOI: 10.1136/bmjdrc-2016-000273

[…] . The background adjustment was performed by subtracting the median background values from the median expression values. Data were processed using log2 and then normalized using the quantile function aroma.light package. The differentially expressed genes were identified using the F-test with Benjamini-Hochberg correction in order to compare between groups. These analyses were performed using the […]

library_books

Identification of microRNAs with Dysregulated Expression in Status Epilepticus Induced Epileptogenesis

2016
PLoS One
PMCID: 5047645
PMID: 27695061
DOI: 10.1371/journal.pone.0163855

[…] yVision microarray quantification software (Imaging Research Inc., GE Healthcare, Buckinghamshire, UK). Normalization of data was performed by quantile in the R environment (version 2.11.0) using the AROMA light package (http://www.bioconductor.org). Statistical data were analyzed using the Multiexperiment Viewer (MeV) software (version 3.1 available online at http://www.tm4.org/mev.html). The pai […]

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