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Array Designer specifications


Unique identifier OMICS_00825
Name Array Designer
Software type Application/Script
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
License Commercial
Computer skills Medium
Stability Stable
Free trial Yes
Maintained Yes


No version available


  • person_outline Beacon Designer Team

Array Designer citations


Identification and Comparison of Candidate Olfactory Genes in the Olfactory and Non Olfactory Organs of Elm Pest Ambrostoma quadriimpressum (Coleoptera: Chrysomelidae) Based on Transcriptome Analysis

PLoS One
PMCID: 4723088
PMID: 26800515
DOI: 10.1371/journal.pone.0147144

[…] s, followed by 40 cycles of 94°C for 5 s, 60°C for 15 s, and 72°C for 34 s. RT-qPCR data analysis was performed using the 2-ΔΔCT method. All of the primers used in this experiment were designed with Array Designer 4.3 (PRIMIER Biosoft, Palo Alto, CA, USA) and are listed in . The qPCR data were analyzed and output as TIF files using Graphpad Prism 5.0. For RT-PCR, the intensity of target bands wer […]


Gonadal transcriptomic analysis and differentially expressed genes in the testis and ovary of the Pacific white shrimp (Litopenaeus vannamei)

BMC Genomics
PMCID: 4659196
PMID: 26607692
DOI: 10.1186/s12864-015-2219-4

[…] fy sex differentially expressed genes as identified from the gonadal transcriptome.The sequences of 47 up-regulated testicular and 57 up-regulated ovarian unigenes were chosen for primer design using Array Designer 4 ( The β-actin (BQF: 5′-GTGTGACGACGAAGTAGC-3′, BQR: 5′-GATACCTCGCTTGCTCTG-3′) was used as a reference gene. Total RNAs were reverse- […]


Autophagy Controls BCG Induced Trained Immunity and the Response to Intravesical BCG Therapy for Bladder Cancer

PLoS Pathog
PMCID: 4214925
PMID: 25356988
DOI: 10.1371/journal.ppat.1004485

[…] 541)). Blood samples were obtained by venapuncture. Genomic DNA was isolated from EDTA blood using standard methods, and 5 ng of DNA was used for genotyping. Multiplex assays were designed using Mass ARRAY Designer Software (Sequenom) and genotypes were determined using Sequenom MALDI-TOF MS according to manufacturer's instructions (Sequenom Inc., San Diego, CA, USA) as described previously . In v […]


Transcriptome analysis of the differences in gene expression between testis and ovary in green mud crab (Scylla paramamosain)

BMC Genomics
PMCID: 4124137
PMID: 25015001
DOI: 10.1186/1471-2164-15-585

[…] estis-specifically expressed genes libraries. The sequences of the 183 (60 + 68 + 55) differentially expressed genes and testis/ovary specifically expressed genes were chosen for design primers using Array Designer 4( The housekeeping gene 18S rRNA was used as an endogenous control.qRT-PCR was performed for the 60 differentially expressed genes t […]


Utilisation of Mucin Glycans by the Human Gut Symbiont Ruminococcus gnavus Is Strain Dependent

PLoS One
PMCID: 3808388
PMID: 24204617
DOI: 10.1371/journal.pone.0076341

[…] A total of 1499 60-mer probes were designed for microarray experiments based on R. gnavus ATCC 29149 genome information using Array Designer 3.0 software (PREMIER Biosoft International, Palo Alto, CA) and printed on Agilent Custom Oligonucleotide Microarrays 8×15 k. For sample preparation, the Sau3AI-digested ATCC 29149 geno […]


Microarray gene expression profiles from mature gonad tissues of Atlantic bluefin tuna, Thunnus thynnus in the Gulf of Mexico

BMC Genomics
PMCID: 3478158
PMID: 23036107
DOI: 10.1186/1471-2164-13-530

[…] TIGR Gene Indices Clustering software to create a non-redundant set of ESTs []. A total of 7068 EST clusters were generated and annotated with the Blastx algorithm [] and Blast2GO software suite []. Array Designer software (Premier Biosoft International, Palo Alto, CA, USA) was used to select from the 7068 ESTs approximately three sense strand probes per EST each being a unique complimentary sequ […]


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Array Designer institution(s)
PREMIER Biosoft, Palo Alto CA, USA

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