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ArrayExpress | Importing ArrayExpress datasets into R/Bioconductor

A database of functional genomics experiments that can be queried and the data downloaded. ArrayExpress includes data generated by sequencing or array-based technologies. Data are submitted by users and imported directly from the NCBI Gene Expression Omnibus. The ArrayExpress Archive is closely integrated with the Gene Expression Atlas and the sequence databases at the European Bioinformatics Institute. Advanced queries provided via ontology enabled interfaces include queries based on technology and sample attributes such as disease, cell types and anatomy.

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ArrayExpress classification

ArrayExpress specifications

Unique identifier:
OMICS_01023
Maintained:
Yes
Restrictions to use:
None

ArrayExpress support

Documentation

Maintainer

  • Alvis Brazma <>

Credits

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Publications

Institution(s)

Functional Genomics Team, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, UK

Funding source(s)

ArrayExpress and related activities are supported by member states of the European Molecular Biology Laboratory; European Commission: ENGAGE [201413], EurocanPlatform [260791], GEUVADIS [261123], SLING [226073], SYBARIS [242220], EUROCANPLATFORM [260791], CAGEKID [241669], BioMedBridges [284209] and Gen2Phen [200754]; US National Institutes of Health (the National Human Genome Research Institute, National Institute of Biomedical Imaging and Bioengineering and the National Cancer Institute) [P41 HG003619]; National Center for Biomedical Ontology (one of the National Centers for Biomedical Computing supported by the National Human Genome Research Institute, the National Heart, Lung, and Blood Institute, and National Institutes of Health Common Fund [U54-HG004028]); National Science Foundation Award Number [1127112].

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