ArrayIDer specifications

Information


Unique identifier OMICS_22594
Name ArrayIDer
Interface Web user interface
Restrictions to use None
Input data An expressed sequence tag list.
Input format TXT
Output data EST clone names or EST accession numbers.
Output format XLS
Programming languages Perl
Computer skills Basic
Stability No
Maintained No

Maintainers


This tool is not available anymore.

Additional information


http://www.agbase.msstate.edu/help/arrayiderhelp.htm

Information


Unique identifier OMICS_22594
Name ArrayIDer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data An expressed sequence tag list.
Input format TXT
Output data EST clone names or EST accession numbers.
Output format XLS
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Advanced
Stability No
Requirements
Archive::Extract, DBI, NET::FTP
Maintained No

Versioning


No version available

Maintainers


This tool is not available anymore.

Additional information


http://www.agbase.msstate.edu/help/arrayiderhelp.htm

Publication for ArrayIDer

ArrayIDer citation

library_books

Re Annotation Is an Essential Step in Systems Biology Modeling of Functional Genomics Data

2010
PLoS One
PMCID: 2871057
PMID: 20498845
DOI: 10.1371/journal.pone.0010642

[…] of the importance of such re-annotation (especially when working in a less widely-used model species). Previously this same dataset was structurally re-annotated when we designed an automated method (ArrayIDer) for microarray structural re-annotation. But because of changes in annotation over the less than 12 months since this annotation, we used ArrayIDer to further update these structural annot […]

ArrayIDer institution(s)
Department of Basic Science, College of Veterinary Medicine, Mississippi State University, MS, USA; Instistute for Digital Biology, Mississippi State University, MS, USA; Department of Molecular & Cellular Biology, University of Arizona, Tucson, AZ, USA; Life Sciences and Biotechnology Institute, Mississippi State University, MS, USA
ArrayIDer funding source(s)
Supported by the National Research Initiative of the USDA Cooperative State Research, Education and Extension Service, grant numbers 2004-34481-14513, 2004-35204-14829, 2006-35204-16549 and 2007- 35205-17941.

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