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arrayMagic

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Facilitates the analysis of two colour cDNA microarray data. It aims to provide quality assured and normalized data. arrayMagic bridges the gap between the image quantification software and subsequent statistical and explorative analyses like testing for differential expression or classification. It simplifies the task of building processing pipelines that are reproducible, which means that even for idiosyncratic experimental designs and non-trivial combinations and selections of the data the whole procedure, from raw data to normalized, quality-controlled, annotated and summarized data, is documented in a not too verbose script that can at any time be re-run or extended.

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arrayMagic forum

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arrayMagic classification

arrayMagic specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
BSD 2-clause “Simplified” License
Stability:
Stable

arrayMagic distribution

versioning

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No versioning.

arrayMagic support

Documentation

Credits

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Publications

Institution(s)

Department of Molecular Genome Analysis, German Cancer Research Center, Heidelberg, Germany

Link to literature

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