arrayMvout statistics

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arrayMvout specifications

Information


Unique identifier OMICS_02019
Name arrayMvout
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.38.0
Stability Stable
Requirements
methods, Biobase, utils, tools, affy, R(>=2.6.0), affydata, lumiBarnes, affyPLM, lumi, simpleaffy, parody, mdqc, affyContam, MAQCsubset, mvoutData, hgu133atagcdf
Maintained Yes

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Documentation


arrayMvout in publications

 (3)
PMCID: 5486007
PMID: 28574441
DOI: 10.3390/ijms18061184

[…] in an r/bioconductor environment. the microarray data preprocessing was performed in the same way as described in our previous study []. the quality of the microarray data was analysed using arraymvout 1.12.0 library []. the raw data were preprocessed using the gcrma method []. the microarray data discussed in this publication have been deposited in ncbi’s gene expression omnibus [], […]

PMCID: 3520972
PMID: 23251415
DOI: 10.1371/journal.pone.0051013

[…] and beadarray for illumina beadarray. once metrics have been calculated, outliers must be determined either visually using the displays offered by those packages, or automatically using mdqc or arraymvout . the metrics are not comparable from study to study or platform to platform. they are also not comparable if samples have been treated with different protocols in the same study, […]

PMCID: 2638936
PMID: 19015138
DOI: 10.1093/bioinformatics/btn591

[…] by this approach substantially increases inferential power, or the ability to detect differential expression, in large clinical studies., availability: http://bioconductor.org/packages/2.3/bioc/html/arraymvout.html and http://bioconductor.org/packages/2.3/bioc/html/affycontam.html affycontam (credentials: readonly/readonly), contact: [email protected]; [email protected], recent […]


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