ArrayOligoSelector statistics

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ArrayOligoSelector specifications

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Unique identifier OMICS_00826
Name ArrayOligoSelector
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages C, Python
Computer skills Advanced
Version 3.8.4
Stability Stable
Maintained Yes

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Publication for ArrayOligoSelector

ArrayOligoSelector in publications

 (26)
PMCID: 4942948
PMID: 27411447
DOI: 10.1186/s12864-016-2853-5

[…] 6,346 of the 6,354 predicted orfs in the annotated c. albicans genome assembly 19. probes consisted of unique orf-specific 70-mer oligonucleotides, oligonucleotide sequences were selected using an arrayoligoselector software and were obtained from illumina (san diego, ca). each probe was spotted three times per slide, thus 19,308 spots were present on each array plus 10 genes from arabidopsis […]

PMCID: 4207638
PMID: 25340504
DOI: 10.1371/journal.pgen.1004712

[…] a horse wg tiling array was designed using the horse genome draft sequence (equcab2, http://www.ncbi.nlm.nih.gov/assembly/286598; , oligowiz2.0 (http://www.cbs. dtu.dk/services/oligowiz/), arrayoligoselector (http://arrayoligosel.sourceforge.net/), and arraydesign software packages. the array comprised 417,377 60-mer oligonucleotide probes: 85,852 probes corresponded to one […]

PMCID: 3606632
PMID: 23514374
DOI: 10.1186/1471-2164-14-195

[…] all fungal species as the representative gene set., the microarray platform, hybridization methods and data analysis have been described [,]. more than 13,000 oligonucleotides were designed using arrayoligoselector and printed randomly in duplicates on the slides. they were designed to minimize chances of a secondary match, and to be 3′ biased where possible. myc and s1-pri rna samples […]

PMCID: 3595295
PMID: 23554923
DOI: 10.1371/journal.pone.0058773

[…] from the genomic sequence with nibfrag software (http://hgwdev.cse.ucsc.edu/~kent/src/unzipped/utils/nibfrag/, jim kent, university of california, santa cruz). 60 mer probes were chosen with arrayoligoselector software (http://arrayoligosel.sourceforge.net/) with up to 10 oligos per gene. arrays were ordered in 8×15 k format from agilent technologies (santa clara, ca) (design amaid […]

PMCID: 3110205
PMID: 21687739
DOI: 10.1371/journal.pone.0020656

[…] in the international committee on taxonomy of viruses database as of november 2008 , . design principles used for apm oligonucleotides (70-mers) were based on previous pan-viral microarrays using arrayoligoselector (aos) . in addition, non-viral pathogens including, nosema (microsporidia), crithidia (trypanosomatid), varroa (mite), tropilaelaps (mite) and acarapis (tracheal mite) as well […]


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ArrayOligoSelector institution(s)
Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA; Department of Molecular and Cellular Pharmacology, University of California San Francisco, San Francisco, CA, USA
ArrayOligoSelector funding source(s)
Supported by an award from the Searle Foundation and the Burroughs Wellcome Fund.

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