arrayQuality pipeline

arrayQuality specifications

Information


Unique identifier OMICS_02020
Name arrayQuality
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


arrayQuality IN pipeline

2011
PMCID: 3195753
PMID: 21952044
DOI: 10.1186/1746-4811-7-29

[…] in both channels, as well as visually bad or contaminated spots, were flagged out. further data analysis was performed with r/bioconductor packages. hybridization quality was assessed with arrayquality [43] and arrayqualitymetrix [44]. limma was used for normalization and assessing gene differential expression [45]. data filtering and other calculations were made in microsoft office […]

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