A web-based, interactive application for the analysis of immunoglobulins and T cell receptors using next-generation sequencing data. ARResT/Interrogate can organize and filter large amounts of immunogenetic data by various criteria. It calculates several relevant statistics, and presents results in the form of multiple interconnected visualizations. ARResT/Interrogate is implemented primarily in R, and is freely available.

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ARResT/Interrogate classification

ARResT/Interrogate specifications

Software type:
Package
Restrictions to use:
None
Computer skills:
Advanced
Interface:
Command line interface
Programming languages:
R
Stability:
Stable
Issue URL:
https://github.com/infspiredBAT/ARResT.Interrogate/issues

ARResT/Interrogate support

Maintainer

  • Nikos Darzentas <>

Credits

Publications

Institution(s)

CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic; RECAMO, Masaryk Memorial Cancer Institute, Brno, Czech Republic; Centro Ricerca Tettamanti, Clinica Pediatrica, Università di Milano-Bicocca, Ospedale San Gerardo/Fondazione MBBM, Monza, Italy; Department of Hematology, University Hospital Schleswig-Holstein, Campus Kiel, Kiel, Germany; Department of Medicine V, University Hospital Heidelberg, Heidelberg, Germany; Department of Hematology, Hopital Pitié-Salpêtrière and Pierre et Marie Curie University, Paris, France; Department of Pathology, Radboud University Nijmegen Medical Center, Nijmegen, Netherlands; Department of Immunology, Erasmus MC, University Medical Center, Rotterdam, Netherlands

Funding source(s)

MetaCentrum (LM2010005), and CERIT-SC (CERIT Scientific Cloud, Operational Program Research and Development for Innovations, Reg. no. CZ.1.05/3.2.00/08.0144); Research grant AZV-MZ-CR 16-34272A-4/2016, project CEITEC 2020 (LQ1601), and ESLHO::EuroClonality; Project MEYS-NPS I-LO1413

Link to literature

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