ARResT/Interrogate statistics

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ARResT/Interrogate specifications

Information


Unique identifier OMICS_13249
Name ARResT/Interrogate
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Nikos Darzentas <>

Publication for ARResT/Interrogate

ARResT/Interrogate in publication

PMCID: 5678457
PMID: 28645875
DOI: 10.1016/j.clim.2017.06.005

[…] when possible (table s1). the raw ngs data were processed, annotated with germline sequences from imgt® and/or using imgt/v-quest and imgt/highv-quest (http://www.imgt.org), and analysed through arrest/interrogate . as part of arrest/interrogate, and with the use of the r language for statistical computing [www.r-project.org]: the jensen-shannon divergence was used to compute repertoire […]


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ARResT/Interrogate institution(s)
CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic; RECAMO, Masaryk Memorial Cancer Institute, Brno, Czech Republic; Centro Ricerca Tettamanti, Clinica Pediatrica, Università di Milano-Bicocca, Ospedale San Gerardo/Fondazione MBBM, Monza, Italy; Department of Hematology, University Hospital Schleswig-Holstein, Campus Kiel, Kiel, Germany; Department of Medicine V, University Hospital Heidelberg, Heidelberg, Germany; Department of Hematology, Hopital Pitié-Salpêtrière and Pierre et Marie Curie University, Paris, France; Department of Pathology, Radboud University Nijmegen Medical Center, Nijmegen, Netherlands; Department of Immunology, Erasmus MC, University Medical Center, Rotterdam, Netherlands
ARResT/Interrogate funding source(s)
MetaCentrum (LM2010005), and CERIT-SC (CERIT Scientific Cloud, Operational Program Research and Development for Innovations, Reg. no. CZ.1.05/3.2.00/08.0144); Research grant AZV-MZ-CR 16-34272A-4/2016, project CEITEC 2020 (LQ1601), and ESLHO::EuroClonality; Project MEYS-NPS I-LO1413

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