ARResT/Interrogate statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ARResT/Interrogate
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Tool usage distribution map

This map represents all the scientific publications referring to ARResT/Interrogate per scientific context
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Associated diseases

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ARResT/Interrogate specifications

Information


Unique identifier OMICS_13249
Name ARResT/Interrogate
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Nikos Darzentas

Publication for ARResT/Interrogate

ARResT/Interrogate citations

 (2)
library_books

High resolution IgH repertoire analysis reveals fetal liver as the likely origin of life long, innate B lymphopoiesis in humans

2017
PMCID: 5678457
PMID: 28645875
DOI: 10.1016/j.clim.2017.06.005

[…] ells when possible (Table S1). The raw NGS data were processed, annotated with germline sequences from IMGT® and/or using IMGT/V-QUEST and IMGT/HighV-QUEST (http://www.imgt.org), and analysed through ARResT/Interrogate . As part of ARResT/Interrogate, and with the use of the R language for statistical computing [www.R-project.org]: the Jensen-Shannon divergence was used to compute repertoire simil […]

library_books

Vidjil: A Web Platform for Analysis of High Throughput Repertoire Sequencing

2016
PLoS One
PMCID: 5106020
PMID: 27835690
DOI: 10.1371/journal.pone.0166126

[…] sequencing (with millions of sequencing reads). Also the user needs to upload the results from IMGT/HighV-QUEST, together with the sequence files, which makes the use of the software less practical. ARResT/Interrogate allows to upload results in tabular form (obtained, for instance, with IMGT/HighV-QUEST), and to display results and statistics. However, it does not provide easy sequence upload an […]


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ARResT/Interrogate institution(s)
CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic; RECAMO, Masaryk Memorial Cancer Institute, Brno, Czech Republic; Centro Ricerca Tettamanti, Clinica Pediatrica, Università di Milano-Bicocca, Ospedale San Gerardo/Fondazione MBBM, Monza, Italy; Department of Hematology, University Hospital Schleswig-Holstein, Campus Kiel, Kiel, Germany; Department of Medicine V, University Hospital Heidelberg, Heidelberg, Germany; Department of Hematology, Hopital Pitié-Salpêtrière and Pierre et Marie Curie University, Paris, France; Department of Pathology, Radboud University Nijmegen Medical Center, Nijmegen, Netherlands; Department of Immunology, Erasmus MC, University Medical Center, Rotterdam, Netherlands
ARResT/Interrogate funding source(s)
MetaCentrum (LM2010005), and CERIT-SC (CERIT Scientific Cloud, Operational Program Research and Development for Innovations, Reg. no. CZ.1.05/3.2.00/08.0144); Research grant AZV-MZ-CR 16-34272A-4/2016, project CEITEC 2020 (LQ1601), and ESLHO::EuroClonality; Project MEYS-NPS I-LO1413

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