ART specifications

Information


Unique identifier OMICS_00247
Name ART
Alternative names ART-ApplePie, ART-CranberryJuice, ART-CoconutCoffee, ART-PeachPie, ART-GrapeWine, ART-BananaPancakes, ART-VanillaIceCream, ART-ChocolateCherries, ART-ChocolateCherryCake, ART-GreatSmokyMountains, ART-MountRainier
Software type Application/Script
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Life Technologies, Roche
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Advanced
Version MountRainier-2016-06-05
Stability Stable
Source code URL https://www.niehs.nih.gov/research/resources/assets/docs/artsrcmountrainier20160605linuxtgz.tgz
Maintained No

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Publication for ART

ART citations

 (2)
library_books

Genome wide detection of conservative site specific recombination in bacteria

2018
PLoS Genet
PMCID: 5903667
PMID: 29621238
DOI: 10.1371/journal.pgen.1007332

[…] Random DNA sequence was generated using Bioinformatics Toolbox from Matlab R2017b (MathWorks). Paired-end Illumina high-throughput sequencing reads were simulated using ART-MountRainier-2016-06-05 [] using Illumina HiSeq 2500 and HiSeq 2000 built-in parameters with read length of 50, 100 or 150 bp and mean fragment size of 250, 500 or 800 bp ± 20% standard deviation. […]

library_books

Differentiating Botulinum Neurotoxin Producing Clostridia with a Simple, Multiplex PCR Assay

2017
Appl Environ Microbiol
PMCID: 5583490
PMID: 28733282
DOI: 10.1128/AEM.00806-17

[…] rogenes, GCF_000022765.1 [Kyoto-F]; for group II, GCF_000020285.1 [Alaska E43]). If sequence reads were not available for a genome, reads were simulated from publicly available genome assemblies with ART (MountRainier) () using the following command: art_illumina -ss MSv3 -sam -l 250 -f 75 -m 300 -s 30 -i input -o output. Positions were removed from the analysis if the depth of coverage was less t […]

ART institution(s)
Biostatistics Branch, National Institute of Environmental Health Sciences, Research Triangle Park, NC, USA; Department of Biology, Boston College, Chestnut Hill, MA, USA
ART funding source(s)
Supported in part by Intramural Research Program of the National Institutes of Health; National Institute of Environmental Health Sciences (ES101765); National Human Genome Research Institute, National Institutes of Health (HG003698 and HG004719).

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