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ArtificialFastqGenerator specifications
Information
| Unique identifier | OMICS_00248 |
|---|---|
| Name | ArtificialFastqGenerator |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Programming languages | Java |
| License | GNU General Public License version 2.0 |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
Versioning
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Documentation
- Documentation: https://sourceforge.net/p/artfastqgen/wiki/Home/
Maintainer
- person_outline Matthew Frampton <>
Publication for ArtificialFastqGenerator
library_books
Generation of artificial FASTQ files to evaluate the performance of next-generation sequencing pipelines.
2012 PLoS One
PMCID: 3495771
PMID: 23152858
DOI: 10.1371/journal.pone.0049110
ArtificialFastqGenerator in publication
PMCID: 5320680
PMID: 28348823
DOI: 10.1099/mgen.0.000039
[…] sequence alignment of all samples. all of the above were performed on the public health england galaxy instance (; ; ). snp filtering criteria were validated using simulated data generated using artificialfastqgenerator (). maximum-parsimony phylogeny was inferred in mega6 (). figtree 1.4.2 (http://tree.bio.ed.ac.uk/software/figtree) was used to produce all final figures. spades 3.1.1 () […]
ArtificialFastqGenerator institution(s)
Division of Genetics and Epidemiology, Institute of Cancer Research, Surrey, UK
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