ARTIST specifications

Information


Unique identifier OMICS_10216
Name ARTIST
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

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Publication for ARTIST

ARTIST in publications

 (8)
PMCID: 5736797
PMID: 29109175
DOI: 10.1128/IAI.00612-17

[…] versus experimental insertion density fold change cutoff generated by essentials was used to separate ce from nonessential genes. the ta site insertion tallies for the data in were generated using artist ()., the vector insertion mutant gbs ╬┤rela was generated using the temperature-sensitive shuttle vector phy304 as previously described (), with the following details. phy304 was linearized […]

PMCID: 5719062
PMID: 29213059
DOI: 10.1038/s41598-017-17149-9

[…] the details available in supplementary information. of the 21 genes identified by transit, 19 of these genes were also identified by tn-seq explorer, but only 3 out of this 21 were identified by artist. the 19 genes were hsca, rbsr, fepd, efp, oxyr, pola, ybad, arod, ruva, xtha, dps, arob, uvrd, tonb, uvra, arok, ybbm, lon, and proc. two genes, fepd and xtha, were identified by the all 3 […]

PMCID: 5705914
PMID: 29184024
DOI: 10.1128/mBio.01170-17

[…] hiseq 2500 platform at the millard and muriel jacobs genetics and genomics laboratory at caltech. sequences were mapped to the ucbpp-pa14 genome sequence using bowtie () and analyzed using the artist tn-seq analysis pipeline in matlab (). briefly, total reads mapping to each gene in the carbon- or oxygen-limited samples were compared to their corresponding reads in the control samples […]

PMCID: 5626973
PMID: 28974620
DOI: 10.1128/mBio.01581-17

[…] in e.┬ápiscicida eib202 () and then determined the genomic distribution of insertion sites using massively parallel sequencing. the distribution of insertion sites was further characterized using el-artist, a hidden markov model (hmm) analysis pipeline that identifies loci statistically underrepresented among insertion mutants (). sequencing of the e.┬ápiscicida library identified 80,616 distinct […]

PMCID: 5596212
PMID: 28943871
DOI: 10.3389/fmicb.2017.01723

[…] oregon state university, corvallis)., sequencing reads obtained from the illumina hiseq 2000 single end read were analyzed using analysis of high-resolution transposon-insertion sequences technique (artist; pritchard et al., ). briefly, demultiplexed reads with 20 bp transposon junction sequence were aligned against s. typhimurium 14028s complete genome (accession number: nc_016856.1) using […]


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ARTIST institution(s)
Department of Microbiology, Harvard Medical School, Boston, MA, USA
ARTIST funding source(s)
This work was supported by the Howard Hughes Medical Institute, the National Institutes of Health (AI R37-42347; 5F32 GM108355-02) and the Swiss Foundation for Grants in Biology and Medicine (PASMP3_142724/1).

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