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ArtRepair specifications


Unique identifier OMICS_30748
Name ArtRepair
Software type Package/Module, Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB
Computer skills Medium
Version 5b
Stability Beta
Maintained Yes




No version available


  • person_outline Paul Mazaika

Additional information

ArtRepair citations


Simulating reading acquisition: The link between reading outcome and multimodal brain signatures of letter–speech sound learning in prereaders

Sci Rep
PMCID: 5940897
PMID: 29740067
DOI: 10.1038/s41598-018-24909-8
call_split See protocol

[…] ns exceeding a scan-to-scan motion threshold of 1.5 mm/TR or with overall motion above 6 mm were excluded from further analyses. Movement artefacts in the remaining data sets were corrected using the ArtRepair toolbox (Supplementary Information). […]


Evaluation of fronto striatal networks during cognitive control in unmedicated patients with schizophrenia and the effect of antipsychotic medication

NPJ Schizophr
PMCID: 5938238
PMID: 29736018
DOI: 10.1038/s41537-018-0051-y

[…] were implemented in SPM8 (Wellcome Trust Centre for Neuroimaging). Preprocessing included slice-timing correction, realignment, reslicing at 1.5 mm isotropic voxels, motion/artifact correction using ArtRepair, DARTEL normalization, and smoothing (4 mm full-width at half-maximum Gaussian kernel). Analysis for the Stroop task consisted of a single-subject voxel-by-voxel general linear model. Five c […]


“Neural overlap of L1 and L2 semantic representations across visual and auditory modalities: a decoding approach”

PMCID: 5946896
PMID: 29605594
DOI: 10.1016/j.neuropsychologia.2018.03.037
call_split See protocol

[…] ome Department of Cognitive Neurology, London, UK). Reduction of T1 relaxation artefacts was pursued by exclusion of the first nine scans of all runs. The functional images were motion corrected with ArtRepair (Artifact Repair Toolbox v4), corrected for slice scan time differences and spatially realigned to their mean image by rigid body transformation. The anatomical image was normalized to the M […]


Neural responses to visually observed social interactions

PMCID: 5899757
PMID: 29476765
DOI: 10.1016/j.neuropsychologia.2018.02.023

[…] (reconstruction matrix = 256 × 256); 170 contiguous slices, acquired voxel size = .99 × 1.12 × 2.0 mm (reconstructed voxel size = 1 mm3).Before realignment, functional image runs were inspected using ArtRepair version 5b ( to assess excessive scan-to-scan head-motion. As head motion can reduce classification accuracy (), we adopt […]


Modulation of inhibitory control by prefrontal anodal tDCS: A crossover double blind sham controlled fMRI study

PLoS One
PMCID: 5874055
PMID: 29590181
DOI: 10.1371/journal.pone.0194936

[…] the “unified segmentation” [, ] on the mean T1-weighted coregistered on fMRI images native space, and finally a smoothing with an isotropic 8-mm full width at half-maximum (FWHM) Gaussian kernel. The Artrepair toolbox was used to detect the presence of rapid movements between the fMRI images (one subject was excluded because more than 10% of scans showed rapid motion above 0.5 mm/TR for both sessi […]


Aberrant salience network functional connectivity in auditory verbal hallucinations: a first episode psychosis sample

PMCID: 5913255
PMID: 29581420
DOI: 10.1038/s41398-018-0118-6

[…] kernel. If excessive movement was noted of realignment, defined as a translation of > 1 voxel (3 mm × 3 mm × 2 mm) or rotation of >2 degrees, artefact repair was performed to correct for it using the ArtRepair toolbox.Preprocessing of resting state scans: The first ten volumes from each scan were excluded as dummy scans to allow stability of longitudinal magnetisation. The images were then reorien […]


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ArtRepair funding source(s)
Supported by the National Institute of Mental Health, Grant Number K25MH077309.

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