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Protocols

ArtRepair specifications

Information


Unique identifier OMICS_30748
Name ArtRepair
Software type Package/Module, Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB
Computer skills Medium
Version 5b
Stability Beta
Requirements
SPM
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Paul Mazaika

Additional information


http://cibsr.stanford.edu/content/dam/sm/cibsr/documents/tools/methods/artrepair-software/ArtRepairOverview.pdf

ArtRepair citations

 (72)
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Simulating reading acquisition: The link between reading outcome and multimodal brain signatures of letter–speech sound learning in prereaders

2018
Sci Rep
PMCID: 5940897
PMID: 29740067
DOI: 10.1038/s41598-018-24909-8
call_split See protocol

[…] ns exceeding a scan-to-scan motion threshold of 1.5 mm/TR or with overall motion above 6 mm were excluded from further analyses. Movement artefacts in the remaining data sets were corrected using the ArtRepair toolbox (Supplementary Information). […]

library_books

Evaluation of fronto striatal networks during cognitive control in unmedicated patients with schizophrenia and the effect of antipsychotic medication

2018
NPJ Schizophr
PMCID: 5938238
PMID: 29736018
DOI: 10.1038/s41537-018-0051-y

[…] were implemented in SPM8 (Wellcome Trust Centre for Neuroimaging). Preprocessing included slice-timing correction, realignment, reslicing at 1.5 mm isotropic voxels, motion/artifact correction using ArtRepair, DARTEL normalization, and smoothing (4 mm full-width at half-maximum Gaussian kernel). Analysis for the Stroop task consisted of a single-subject voxel-by-voxel general linear model. Five c […]

call_split

“Neural overlap of L1 and L2 semantic representations across visual and auditory modalities: a decoding approach”

2018
Neuropsychologia
PMCID: 5946896
PMID: 29605594
DOI: 10.1016/j.neuropsychologia.2018.03.037
call_split See protocol

[…] ome Department of Cognitive Neurology, London, UK). Reduction of T1 relaxation artefacts was pursued by exclusion of the first nine scans of all runs. The functional images were motion corrected with ArtRepair (Artifact Repair Toolbox v4), corrected for slice scan time differences and spatially realigned to their mean image by rigid body transformation. The anatomical image was normalized to the M […]

library_books

Neural responses to visually observed social interactions

2018
Neuropsychologia
PMCID: 5899757
PMID: 29476765
DOI: 10.1016/j.neuropsychologia.2018.02.023

[…] (reconstruction matrix = 256 × 256); 170 contiguous slices, acquired voxel size = .99 × 1.12 × 2.0 mm (reconstructed voxel size = 1 mm3).Before realignment, functional image runs were inspected using ArtRepair version 5b (cibsr.stanford.edu/tools/human-brain-project/artrepair-software.html) to assess excessive scan-to-scan head-motion. As head motion can reduce classification accuracy (), we adopt […]

library_books

Modulation of inhibitory control by prefrontal anodal tDCS: A crossover double blind sham controlled fMRI study

2018
PLoS One
PMCID: 5874055
PMID: 29590181
DOI: 10.1371/journal.pone.0194936

[…] the “unified segmentation” [, ] on the mean T1-weighted coregistered on fMRI images native space, and finally a smoothing with an isotropic 8-mm full width at half-maximum (FWHM) Gaussian kernel. The Artrepair toolbox was used to detect the presence of rapid movements between the fMRI images (one subject was excluded because more than 10% of scans showed rapid motion above 0.5 mm/TR for both sessi […]

library_books

Aberrant salience network functional connectivity in auditory verbal hallucinations: a first episode psychosis sample

2018
PMCID: 5913255
PMID: 29581420
DOI: 10.1038/s41398-018-0118-6

[…] kernel. If excessive movement was noted of realignment, defined as a translation of > 1 voxel (3 mm × 3 mm × 2 mm) or rotation of >2 degrees, artefact repair was performed to correct for it using the ArtRepair toolbox.Preprocessing of resting state scans: The first ten volumes from each scan were excluded as dummy scans to allow stability of longitudinal magnetisation. The images were then reorien […]

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ArtRepair funding source(s)
Supported by the National Institute of Mental Health, Grant Number K25MH077309.

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