ARWEN protocols

ARWEN specifications

Information


Unique identifier OMICS_04228
Name ARWEN
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Information


Unique identifier OMICS_04228
Name ARWEN
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for ARWEN

ARWEN IN pipelines

 (3)
2016
PMCID: 4977796
PMID: 27417096
DOI: 10.3347/kjp.2016.54.3.369

[…] reported previously [7]. the gene boundaries of the mt genomic sequence of a. magna were identified by alignment in comparison to those of a. perfoliata. total 22 trna genes were found using arwen [9] and further determined by checking anticodon sequences and potential secondary structures. putative stem-loop structures of non-coding regions were inferred through comparison with similar […]

2015
PMCID: 4440745
PMID: 25996944
DOI: 10.1371/journal.pone.0127519

[…] [31]. alignments were used to further confirm the location of genes and to identify appropriate start/stop codons. transfer rna (trna) sequences and secondary structures were identified using arwen v1.2 [32]. complete mitochondrial genome fasta files for m. leonina and t. diomedea were independently uploaded to arwen using the default settings and the invertebrate mitochondrial genetic […]

2015
PMCID: 4440745
PMID: 25996944
DOI: 10.1371/journal.pone.0127519

[…] transfer rna (trna) sequences and secondary structures were identified using arwen v1.2 [32]. complete mitochondrial genome fasta files for m. leonina and t. diomedea were independently uploaded to arwen using the default settings and the invertebrate mitochondrial genetic code. evidence indicated that the mitochondrial genome sequences had a circular topology and both strands of the genome […]

ARWEN institution(s)
Murdoch University, Perth, Western Australia, Australia; Björn Canbäck Bioinformatik, Rydebäck, Sweden

ARWEN review

star_border star_border star_border star_border star_border
star star star star star

milw

star_border star_border star_border star_border star_border
star star star star star
Desktop
No longer available online as of Feb 2018