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Protocols

AS-ALPS specifications

Information


Unique identifier OMICS_02865
Name AS-ALPS
Alternative name Alternative Splicing-induced ALteration of Protein Structure
Restrictions to use None
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Publication for Alternative Splicing-induced ALteration of Protein Structure

AS-ALPS citations

 (3)
library_books

A prophage encoded actin like protein required for efficient viral DNA replication in bacteria

2015
Nucleic Acids Res
PMCID: 4446434
PMID: 25916847
DOI: 10.1093/nar/gkv374

[…] am region and the control DNA fragment (upstream of the CGP3 gene cg2040) showed no binding of AlpA.Analysis of the alpAC promoter region revealed the presence of 24 conserved DNA repeats (designated as alpS) (Figure ). EMSA studies with purified AlpA were carried out to determine if AlpA binds to DNA fragments covering these repeats (Figure ). As outlined in Figure , DNA fragments covering variou […]

call_split

Integrating environmental, molecular, and morphological data to unravel an ice age radiation of arctic alpine Campanula in western North America

2014
Ecol Evol
PMCID: 4242577
PMID: 25505522
DOI: 10.1002/ece3.1168
call_split See protocol

[…] tgun Subcloning Kit on genomic DNA extracted from leaf tissue of C. lasiocarpa (accession WWB 22731) using Qiagen's (Valencia, CA) DNeasy® Plant Extraction kit. To select the appropriate loci for use as ALPS, we ran blastn and blastx searches against the nucleotide databases of the National Center for Biotechnology Information. We discarded DNA fragments matching organelle or protein coding sequen […]

library_books

Deep Genetic Divergence between Disjunct Refugia in the Arctic Alpine King’s Crown, Rhodiola integrifolia (Crassulaceae)

2013
PLoS One
PMCID: 3838311
PMID: 24282505
DOI: 10.1371/journal.pone.0079451

[…] quencing reactions using the vector based primer M13. Vector sequence was trimmed from our contigs using Sequencher® v4.8 (Gene Codes Corp, Ann Arbor, MI, USA). To select the appropriate loci for use as ALPS, we ran blastn (nucleotide-nucleotide BLAST) and blastx (translated nucleotide-protein BLAST) searches against the nucleotide databases of the National Center for Biotechnology Information. We […]

Citations

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AS-ALPS institution(s)
Department of Bioscience, Faculty of Bioscience, Nagahama Institute of Bio-Science and Technology, Nagahama, Shiga, Japan

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