AS-GENSENG statistics

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CNV detection CNV detection

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AS-GENSENG specifications

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Information

Unique identifier	OMICS_08044
Name	AS-GENSENG
Software type	Package/Module
Interface	Command line interface
Restrictions to use	None
Operating system	Unix/Linux
Computer skills	Advanced
Stability	Stable
Maintained	Yes

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Maintainer

Jin P. Szatkiewicz <>

Publication for AS-GENSENG

Allele-specific copy-number discovery from whole-genome and whole-exome sequencing.

2015 Nucleic Acids Res

PMCID: 4538801

PMID: 25883151

DOI: 10.1093/nar/gkv319

AS-GENSENG in publication

A randomized approach to speed up the analysis of large scale read count data in the application of CNV detection

PMCID: 5831535

PMID: 29490610

DOI: 10.1186/s12859-018-2077-6

[…] of magnitude faster than genseng across all window sizes; and, 2) when the window size is small (100bps) and the scale of the data is huge (25 million windows), the reduction in running time with as-genseng is remarkable (i.e., r-genseng uses 6 hours but genseng uses 60 hours). fig. 2 , next we evaluated the relative accuracy of r-genseng for cnv calling. we had evaluated previously […]

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AS-GENSENG institution(s)

Department of Genetics, University of North Carolina at Chapel Hill, NC, USA

AS-GENSENG funding source(s)

The National Institutes of Health [K01MH093517 to J.P.S.; R01HG006292, R01CA082659 to W.S.; U01CA105417, U01CA134240, MH090338, HG006703 to W.W.; K01MH094406 to J.J.C.]; the National Science Foundation [IIS1313606 to W.W.].

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