AS-GENSENG statistics

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Citations per year

Number of citations per year for the bioinformatics software tool AS-GENSENG
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Tool usage distribution map

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Associated diseases

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AS-GENSENG specifications

Information


Unique identifier OMICS_08044
Name AS-GENSENG
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Jin P. Szatkiewicz

Publication for AS-GENSENG

AS-GENSENG citation

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A randomized approach to speed up the analysis of large scale read count data in the application of CNV detection

2018
BMC Bioinformatics
PMCID: 5831535
PMID: 29490610
DOI: 10.1186/s12859-018-2077-6

[…] der of magnitude faster than GENSENG across all window sizes; and, 2) when the window size is small (100bps) and the scale of the data is huge (25 million windows), the reduction in running time with AS-GENSENG is remarkable (i.e., R-GENSENG uses 6 hours but GENSENG uses 60 hours). Fig. 2 Next we evaluated the relative accuracy of R-GENSENG for CNV calling. We had evaluated previously the accuracy […]


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AS-GENSENG institution(s)
Department of Genetics, University of North Carolina at Chapel Hill, NC, USA
AS-GENSENG funding source(s)
The National Institutes of Health [K01MH093517 to J.P.S.; R01HG006292, R01CA082659 to W.S.; U01CA105417, U01CA134240, MH090338, HG006703 to W.W.; K01MH094406 to J.J.C.]; the National Science Foundation [IIS1313606 to W.W.].

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