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CNV detection
CNV detection
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AS-GENSENG specifications
Information
| Unique identifier | OMICS_08044 |
|---|---|
| Name | AS-GENSENG |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
Versioning
No version available
Maintainer
- person_outline Jin P. Szatkiewicz
Publication for AS-GENSENG
2015 Nucleic Acids Res
PMCID: 4538801
PMID: 25883151
DOI: 10.1093/nar/gkv319
AS-GENSENG citation
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A randomized approach to speed up the analysis of large scale read count data in the application of CNV detection
2018
BMC Bioinformatics
PMCID: 5831535
PMID: 29490610
DOI: 10.1186/s12859-018-2077-6
[…] der of magnitude faster than GENSENG across all window sizes; and, 2) when the window size is small (100bps) and the scale of the data is huge (25 million windows), the reduction in running time with AS-GENSENG is remarkable (i.e., R-GENSENG uses 6 hours but GENSENG uses 60 hours). Fig. 2 Next we evaluated the relative accuracy of R-GENSENG for CNV calling. We had evaluated previously the accuracy […]
AS-GENSENG institution(s)
Department of Genetics, University of North Carolina at Chapel Hill, NC, USA
AS-GENSENG funding source(s)
The National Institutes of Health [K01MH093517 to J.P.S.; R01HG006292, R01CA082659 to W.S.; U01CA105417, U01CA134240, MH090338, HG006703 to W.W.; K01MH094406 to J.J.C.]; the National Science Foundation [IIS1313606 to W.W.].
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