Protocols

ASAFE specifications

Information


Unique identifier OMICS_12588
Name ASAFE
Alternative name Ancestry Specific Allele Frequency Estimation
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Individuals’ ancestry pairs for the SNPs for which one would like estimates, and the same individuals’ genotypes at these SNPs.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.7.0
Stability Stable
Requirements
testthat, knitr, R(>=3.2)
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Qian Zhang

Publication for Ancestry Specific Allele Frequency Estimation

ASAFE citations

 (2)
library_books

Electrical Stimulation Modulates High γ Activity and Human Memory Performance

2018
eNeuro
PMCID: 5797477
PMID: 29404403
DOI: 10.1523/ENEURO.0369-17.2018

[…] eeding safe charge density limits as referenced. We completely agree with the safety concerns for the future studies and have now added a new statement in the fifth paragraph of Materials and Methods:âSafe amplitude for stimulation was determined at the start of each session using a mapping procedure in which stimulation was applied at 0.5 mA while a neurologist monitored for after-discharges. Thi […]

call_split

Admixture mapping in the Hispanic Community Health Study/Study of Latinos reveals regions of genetic associations with blood pressure traits

2017
PLoS One
PMCID: 5695820
PMID: 29155883
DOI: 10.1371/journal.pone.0188400
call_split See protocol

[…] f the set. We then applied the admixture mapping model while adjusting for these variants in the mixed model (conditional model), and also calculated the ancestry-specific EAF of these variants using ASAFE software. [] […]

ASAFE institution(s)
Department of Medicine, University of Washington, Seattle, WA, USA; Department of Biostatistics, University of Washington, Seattle, WA, USA; Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA, USA
ASAFE funding source(s)
This study was supported by research grant GM099568 from the National Institutes of Health, USA. The Genetic Analysis Center at the University of Washington was supported by NHLBI and NIDCR contracts (HHSN268201300005C AM03 and MOD03).

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