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Associated diseases

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ASAP specifications

Information


Unique identifier OMICS_14593
Name ASAP
Alternative name Automated Single-cell Analysis Pipeline
Interface Web user interface
Restrictions to use None
Input data scRNA-seq read count data, already normalized matrix
Programming languages Java, Python, R
Computer skills Basic
Version 1.0
Stability Stable
Registration required Yes
Maintained Yes

Documentation


Maintainer


  • person_outline Bart Deplancke <>

Information


Unique identifier OMICS_14593
Name ASAP
Alternative name Automated Single-cell Analysis Pipeline
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, R
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable

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Documentation


Maintainer


This tool is not maintained anymore.

Publication for Automated Single-cell Analysis Pipeline

ASAP institution(s)
Institute of Bioengineering; École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland
ASAP funding source(s)
This work has been supported by funds from the Swiss National Science Foundation (#31003A_162735 and #IZLIZ3_156815), by the Commission for Technology and Innovation (CTI), and by Institutional support from the EPFL.

ASAP review

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Arup Ghosh

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Web
One stop shop for single-cell RNA-seq data analysis starting from normalization, clustreing, functional annotation and more.Recently ASAP integrated a feature to create collaborative projects .