|Interface||Command line interface|
|Restrictions to use||None|
|Operating system||Unix/Linux, Mac OS, Windows|
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- person_outline Vessela Kristensen <>
Publication for ASCAT
[…] provide accurate information of the primary tumor cells, which are heterogeneous with mixtures of normal and cancerous cells. to solve this issue, the allele-specific copy number analysis of tumors (ascat)  provides whole-genome allele-specific copy number and construct a genome-wide map of loci with alleles that were preferentially lost, pointing to candidate genes that may drive cancer […]
To remove CG-noise in the data I use PennCNV prior to ASCAT, it works very well in most of the samples.