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ASCONA specifications


Unique identifier OMICS_09380
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Matthias Rarey <>

Publication for ASCONA

ASCONA in publications

PMCID: 5728407
PMID: 29165643
DOI: 10.1093/nar/gkx1145

[…] the authors acknowledge the banff international research station (birs) workshop 15w5167 at casa matemática oaxaca, which initiated this collaborative work, and the ascona b-dna consortium (abc) for providing the tetramer query table for dna shape features derived from 1-μs md simulations of dna fragments that contain all unique tetramers. see for detailed […]

PMCID: 5734496
PMID: 28667217
DOI: 10.1136/bmjopen-2016-015516

[…] from the systematic reviews and references used to develop the taxonomy; the list of attendees at beyond the placebo: biomedical clinical and philosophical aspects of the placebo effect, held in ascona switzerland, august 2012; and gps within the national institute for health research school for primary care research. ethical approval for the survey was obtained from the host institution […]

PMCID: 5397185
PMID: 28088759
DOI: 10.1093/nar/gkw1355

[…] interacted through the grooves with other regions of the dna leading to a propagation of the structural distortion over the central portion of the duplexes (,,–)., massive initiatives, such as the ascona b-dna consortium () are using md simulations on representative duplexes to trace sequence-dependent properties of dna, providing parameters that can be then implemented in coarse-grained […]

PMCID: 5397174
PMID: 27932456
DOI: 10.1093/nar/gkw1236

[…] to dna are needed to supplement training based methods and to eventually provide molecular insights into genome organization. based on a comprehensive series of molecular dynamics simulations of ascona b-dna consortium, we extracted hydrogen bonding, stacking and solvation energies of all combinations of dna sequences at the dinucleotide level and calculated these properties for different […]

PMCID: 5042974
PMID: 27746667
DOI: 10.1007/s11627-016-9781-6

[…] cornelian cherry ‘macrocarpa’, the combination of 0.7 mg l−1 ba and 0.05 mg l−1 naa was optimal and resulted in the highest number of regenerating shoots. edson et al. () propagated c. nuttallii ‘ascona’ and obtained the highest shoot number in the presence of 1.0 mg l−1 ba in the culture medium. for c. florida the best results were obtained on medium containing 0.5 mg l−1 ba and 1.0 mg l−1 […]

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ASCONA institution(s)
University of Hamburg, Center for Bioinformatics (ZBH), Hamburg, Germany

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