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ASEB specifications

Information


Unique identifier OMICS_10772
Name ASEB
Alternative name Acetylation Set Enrichment Based
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Swiss-Prot accession number or protein sequence
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 1.20.0
Stability Stable
Requirements
methods
Maintained Yes

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Documentation


Maintainers


  • person_outline Tingting Li
  • person_outline Likun Wang
  • person_outline Wei-Guo Zhu

Information


Unique identifier OMICS_10772
Name ASEB
Alternative name Acetylation Set Enrichment Based
Interface Web user interface
Restrictions to use None
Input data Swiss-Prot accession number or protein sequence
Programming languages R
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainers


  • person_outline Tingting Li
  • person_outline Likun Wang
  • person_outline Wei-Guo Zhu

Publications for Acetylation Set Enrichment Based

ASEB citations

 (9)
library_books

Protein post translational modifications: In silico prediction tools and molecular modeling

2017
Comput Struct Biotechnol J
PMCID: 5397102
PMID: 28458782
DOI: 10.1016/j.csbj.2017.03.004

[…] he reaction. Although lysine acetyltransferases (KATs) act usually on a multiple-subunit complex, it is still difficult to determine which KATs are responsible for the acetylation of a given protein. ASEB was the first server for KAT-specific human acetylated lysine prediction that not only evaluates possible lysine acetylation sites, but also provides information about the responsible KAT enzyme […]

library_books

Mutation Structure Function Relationship Based Integrated Strategy Reveals the Potential Impact of Deleterious Missense Mutations in Autophagy Related Proteins on Hepatocellular Carcinoma (HCC): A Comprehensive Informatics Approach

2017
Int J Mol Sci
PMCID: 5297772
PMID: 28085066
DOI: 10.3390/ijms18010139

[…] cancer mutations have been previously reported to silence tumor suppressor genes and enhance cancer progression []. For the prediction of acetylation sites in LC3A, LC3B, BECN1 and SCD1, web servers ASEB (http://bioinfo.bjmu.edu.cn/huac/predict_p/) [] and PAIL (http://bdmpail.biocuckoo.org/results.php) [] were used. […]

library_books

Tale of a multifaceted co activator, hADA3: from embryogenesis to cancer and beyond

2016
Open Biol
PMCID: 5043578
PMID: 27605378
DOI: 10.1098/rsob.160153

[…] ] and Phosida []; for ubiquitination, UbPred [], BDM-PUB (http://bdmpub.biocuckoo.org) and CKSAAP []; for SUMOylation, SUMOplot (http://www.abgent.com/sumoplot) and SUMOsp v. 2.0 []; for acetylation, ASEB [] and Phosida []; for nitrosylation, GPS-SNO v. 1.0 [] and iSNO-PseAAC []. hADA3 functions are regulated by these modifications as a result of alteration in their interaction with other proteins […]

library_books

Acetylation and deacetylation of Cdc25A constitutes a novel mechanism for modulating Cdc25A functions with implications for cancer

2016
Oncotarget
PMCID: 4991465
PMID: 26967250
DOI: 10.18632/oncotarget.7966

[…] ollowed by glycine, threonine, valine, and cysteine [, ]. Although there are also no published data in support of acetylated Cdc25A, in silico software predictors for protein acetylation, such as the Acetylation Set Enrichment-Based (ASEB) program [] and the lysine acetylation prediction system, LAceP [], predict acetylation of Cdc25A at several internal lysyl ε-amino groups within the protein. Th […]

library_books

Evidence supporting a critical contribution of intrinsically disordered regions to the biochemical behavior of full length human HP1γ

2015
J Mol Model
PMCID: 4683166
PMID: 26680990
DOI: 10.1007/s00894-015-2874-z

[…] re used to predict phosphorylation were NetPhosK 1.0 [], NetPhos 2.0 [], Kinasephos 2.0 [], DIPHOS [], PhosphoSVM [], Scansite, Musite [], and PPSP []. Acetylation sites were predicted using PAIL [], ASEB [], BRABSB-PHKA [], LysAcet [], and LAceP []. Methylation sites were predicted using BPB-PPMS [] and MASA []. Ubiquitination sites were predicted using BDM-PUB [], CKSAAP UbSite [], and UbPred [] […]

library_books

Data detailing the platelet acetyl lysine proteome

2015
PMCID: 4726637
PMID: 26904711
DOI: 10.1016/j.dib.2015.09.020

[…] oteins at a ≥0.7 confidence score. To assess candidate lysine acetyltransferases involved platelet protein acetyl-lysine modification, all identified acetyl-lysine peptide sequences were put into the Acetylation Set Enrichment-Based (ASEB) prediction tool (http://bioinfo.bjmu.edu.cn/huac/predict_p/) and assigned p-values predicting modification by p300/CBP and GCN5/PCAF lysine acetyltransferases . […]

Citations

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ASEB institution(s)
Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, China; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), State Key Laboratory of Natural and Biomimetic Drugs, Beijing Key Laboratory of Protein Posttranslational Modifications and Cell Function; Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, China; Peking-Tsinghua University Center for Life Science, Peking University, Beijing, China; School of Medicine; Shenzhen University, Shenzhen, China; Institute of Systems Biomedicine, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, China
ASEB funding source(s)
Supported by the National Natural Science Foundation of China [No. 31371337 and No. 91319302] and the National High-Tech Research and Development Program (Grant No. 2012AA020401) of China.

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