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ASEB specifications

Information


Unique identifier OMICS_10772
Name ASEB
Alternative name Acetylation Set Enrichment Based
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Swiss-Prot accession number or protein sequence
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 1.20.0
Stability Stable
Requirements
methods
Maintained Yes

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Documentation


Maintainers


  • person_outline Tingting Li <>
  • person_outline Likun Wang <>
  • person_outline Wei-Guo Zhu <>

Information


Unique identifier OMICS_10772
Name ASEB
Alternative name Acetylation Set Enrichment Based
Interface Web user interface
Restrictions to use None
Input data Swiss-Prot accession number or protein sequence
Programming languages R
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainers


  • person_outline Tingting Li <>
  • person_outline Likun Wang <>
  • person_outline Wei-Guo Zhu <>

Publications for Acetylation Set Enrichment Based

ASEB in publications

 (5)
PMCID: 4991465
PMID: 26967250
DOI: 10.18632/oncotarget.7966

[…] by glycine, threonine, valine, and cysteine [, ]. although there are also no published data in support of acetylated cdc25a, in silico software predictors for protein acetylation, such as the acetylation set enrichment-based (aseb) program [] and the lysine acetylation prediction system, lacep [], predict acetylation of cdc25a at several internal lysyl ε-amino groups within the protein. […]

PMCID: 4683166
PMID: 26680990
DOI: 10.1007/s00894-015-2874-z

[…] used to predict phosphorylation were netphosk 1.0 [], netphos 2.0 [], kinasephos 2.0 [], diphos [], phosphosvm [], scansite, musite [], and ppsp []. acetylation sites were predicted using pail [], aseb [], brabsb-phka [], lysacet [], and lacep []. methylation sites were predicted using bpb-ppms [] and masa []. ubiquitination sites were predicted using bdm-pub [], cksaap ubsite [], and ubpred […]

PMCID: 4726637
PMID: 26904711
DOI: 10.1016/j.dib.2015.09.020

[…] at a ≥0.7 confidence score. to assess candidate lysine acetyltransferases involved platelet protein acetyl-lysine modification, all identified acetyl-lysine peptide sequences were put into the acetylation set enrichment-based (aseb) prediction tool (http://bioinfo.bjmu.edu.cn/huac/predict_p/) and assigned p-values predicting modification by p300/cbp and gcn5/pcaf lysine acetyltransferases […]

PMCID: 4139591
PMID: 25056123
DOI: 10.1007/s00894-014-2357-7

[…] phosphosvm [], scansite [], musite [], ppsp [], and gps 2.0 []. additionally, 3d phosphorylation prediction was performed using phos3d []. acetylation sites were predicted using pail [], predmod [], aseb [], plmla [], pskacepred [], brabsb-phka [], lysacet [], and ensemblepail []. methylation sites were predicted using pmes [], bpb-ppms [], plmla [], and cksaap metsite []. sumoylation sites […]

PMCID: 4104576
PMID: 25042424
DOI: 10.1038/srep05765

[…] of lysine acetylation sites were extracted from multiple public resources. these include cpla (http://cpla.biocuckoo.org/), n-ace (http://n-ace.mbc.nctu.edu.tw/), phosida (http://www.phosida.com/), aseb (http://cmbi.bjmu.edu.cn/huac) and phosphositeplus (http://www.phosphosite.org). amongst these, cpla is a lysine acetylation database that integrates abundant protein annotations, […]

ASEB institution(s)
Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, China; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), State Key Laboratory of Natural and Biomimetic Drugs, Beijing Key Laboratory of Protein Posttranslational Modifications and Cell Function; Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, China; Peking-Tsinghua University Center for Life Science, Peking University, Beijing, China; School of Medicine; Shenzhen University, Shenzhen, China; Institute of Systems Biomedicine, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, China
ASEB funding source(s)
Supported by the National Natural Science Foundation of China [No. 31371337 and No. 91319302] and the National High-Tech Research and Development Program (Grant No. 2012AA020401) of China.

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