ASEQH specifications

Information


Unique identifier OMICS_15392
Name ASEQH
Alternative name Analysis of sequence heterogeneity-sliding window plots
Interface Web user interface
Restrictions to use None
Input format GeneBank
Output format POSTSCRIPT, PDF
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Samuel Karlin

Publications for Analysis of sequence heterogeneity-sliding window plots

ASEQH citation

library_books

Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti

2018
PLoS Genet
PMCID: 5929573
PMID: 29672509
DOI: 10.1371/journal.pgen.1007357

[…] genome map was prepared using the circos v0.67–7 software []; the sliding window insertion density was calculated with the geom_histogram function of ggplot2, and the GC skew was calculated using the analysis of sequence heterogeneity sliding window plots online webserver []. The metabolic model was visualized using the iPath v2.0 webserver []. The logo of the transposon insertion site specificity […]

ASEQH institution(s)
Department of Mathematics, Stanford University, Stanford, CA, USA
ASEQH funding source(s)
Supported in part by NIH grants 5R01GM10452-35 and 5R01HG00335-12.

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