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ASMD specifications


Unique identifier OMICS_18342
Alternative name Alternative Splicing Mutation Database
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 1.1
Maintained No


This tool is not available anymore.

Publication for Alternative Splicing Mutation Database

ASMD citations


Characterization of Fluorescein Arsenical Hairpin (FlAsH) as a Probe for Single Molecule Fluorescence Spectroscopy

Sci Rep
PMCID: 5638890
PMID: 29026195
DOI: 10.1038/s41598-017-13427-8

[…] 3D-folded structure of the peptide (Fig. ). A linear peptide model with no super-secondary interaction was generated by extending the PEP-FOLD model (Fig. ) with Adaptive Steered Molecular Dynamics (ASMD). The well-equilibrated stable linear structure with accessible cysteine and serine residues at the end of this simulation, was used as the starting structure for the subsequent simulation of fou […]


Molecular dynamics simulation reveals how phosphorylation of tyrosine 26 of phosphoglycerate mutase 1 upregulates glycolysis and promotes tumor growth

PMCID: 5355328
PMID: 28076845
DOI: 10.18632/oncotarget.14517
call_split See protocol

[…] Adaptive Steered Molecular Dynamics (ASMD) has been proved to be a powerful tool in studying dissociation of small ligands from proteins []. It was thus used to investigate the unbinding pathway of ligands from PGAM1. For an ASMD calcula […]


Alternative Splicing for Diseases, Cancers, Drugs, and Databases

Sci World J
PMCID: 3674688
PMID: 23766705
DOI: 10.1155/2013/703568

[…] nce sequence for each gene.Some resources of alternative splicing have special features such as splice signals in EuSplice [], tandem splice sites in TassDB2 [], mutational evidence-based analysis in Alternative Splicing Mutation Database [], splicing proteins in SpliceAid 2 [], and transcription factors in TFClass []. However, the impacts of alternative splicing on the spliced transcripts encoded […]


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ASMD institution(s)
Program in Bioinformatics and Proteomics/Genomics, University of Toledo Health Science Campus, Toledo, OH, USA; Dept. of Medical Microbiology and Immunology, University of Toledo Health Science Campus, Toledo, OH, USA; Dept. of Basic Pharmaceutical Sciences, South Carolina College of Pharmacy, University of South Carolina, Columbia, SC, USA; Department of Biological Sciences, Bowling Green State University, Bowling Green, OH, USA; College of Engineering, University of Toledo, Toledo, OH, USA; Dept. of Medicine, University of Toledo Health Science Campus, Toledo, OH, USA
ASMD funding source(s)
Supported by NSF Career grant MCB-0643542.

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