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ASMPKS specifications


Unique identifier OMICS_20952
Software type Application/Script
Interface Web user interface
Restrictions to use Academic or non-commercial use
Programming languages Perl
Computer skills Basic
Stability No
Maintained No


This tool is not available anymore.

Publication for ASMPKS

ASMPKS in publications

PMCID: 5300972
PMID: 28239372
DOI: 10.3389/fmicb.2017.00194

[…] searching and sequence analysis were carried out using antismash (antibiotic and secondary metabolite analysis shell) (; ; ), and blast (). analysis of domains in pks and nrps were carried out using asmpks () and nrps predictor (). search for transmembrane domains was carried out using the tmhmm v.2.0 ()., several plasmids were generated as described in supplementary material, either to express […]

PMCID: 3992020
PMID: 24593309
DOI: 10.1111/1751-7915.12116

[…] out using the bioinformatic tool antismash (medema et al., ; blin et al., ) and the blast program (altschul et al., ). analysis of pks-and nrps-predicted proteins were carried out using programs asmpks (tae et al., ) and nrps predictor (rausch et al., )., deoxyribonucleic acid manipulations were performed according to standard procedures for e. coli (sambrook et al., ) and streptomyces […]

PMCID: 3895014
PMID: 24465762
DOI: 10.1371/journal.pone.0085877

[…] to perform a blastp search in the ncbi non-redundant protein database ( conserved domains were identified using interproscan (, the pks/nrps analysis website and asmpks (∼hstae/asmpks/; smallsoft co. ltd). for each core gene, the genomic locus was inspected for upstream and downstream genes. blastp and interproscan […]

PMCID: 3630128
PMID: 23637983
DOI: 10.1371/journal.pone.0062136

[…] could be improved further by using ensembles of hmms., sequence data from experimentally verified nrpss and pkss of bacteria and fungi were taken from the reference databases nrpsdb, pksdb and asmpks . additional sequence data of experimentally characterized nrps/pks systems, as found via literature searches in pubmed, were taken from ncbi [] and uniprot […]

PMCID: 3815393
PMID: 21261848
DOI: 10.1111/j.1751-7915.2008.00044.x

[…] substrate specificity of nrps and pks. these databases provide an interface to correlate chemical structures of these natural products with the domains and modules in the corresponding pks or nrps. asmpks is a web‐based tool ( for computational analysis of pks systems against genome sequences (). the asmpks can predict functional modules […]

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ASMPKS institution(s)
Information Technology Institute, SmallSoft Co., Ltd., Daejeon, South Korea; Department of Computer Engineering, Chungnam National University, Daejeon, South Korea
ASMPKS funding source(s)
Supported by the grant from MOCIE(Ministry Of Commerce, Industry and Energy) of south Korea.

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