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ASPeak

Enables robust peak detection even in low abundance transcripts. ASPeak is a fast and efficient expression-sensitive peak caller for CLIP- and RIP-Seq data that is sensitive to differential expression levels of target transcripts. Implementation of this method permits to run on multiple processors resulting in a significant speedup when used on high performance computing centers. It is supported with extensive documentation that allows experienced bioinformaticians to customize their analyses using detailed parameter files.

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ASPeak forum

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ASPeak classification

ASPeak specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Perl
Computer skills:
Advanced
Stability:
Beta
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0, GNU General Public License version 2.0
Version:
2.0.1
Maintained:
Yes

ASPeak distribution

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ASPeak support

Maintainers

  • Alper Kucukural <>
  • Can Cenik <>

Credits

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Publications

Institution(s)

Department of Biochemistry and Molecular Pharmacology, Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, MA, USA; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA

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