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Aspergillus Genomes specifications

Information


Unique identifier OMICS_03155
Name Aspergillus Genomes
Restrictions to use None
Maintained Yes

Taxon


  • Plants and Fungi
    • Aspergillus fumigatus

Maintainer


  • person_outline Jane E. Mabey Gilsen

Publication for Aspergillus Genomes

Aspergillus Genomes citations

 (12)
library_books

Genomic Organization and Expression of Iron Metabolism Genes in the Emerging Pathogenic Mold Scedosporium apiospermum

2018
Front Microbiol
PMCID: 5932178
PMID: 29755443
DOI: 10.3389/fmicb.2018.00827

[…] s. Interestingly, in S. apiospermum, the sidC-related cluster contains an ortholog of sidA instead of sidI (a feature also found in T. reesei and C. higginsianum), while sidA gene is not clustered in Aspergillus genomes. As for S. apiospermum sidI ortholog, it belongs to another cluster containing a series of genes putatively involved in siderophore biosynthesis (i.e., sidD, sidF, and sidL ortholo […]

library_books

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

2017
Mol Biol Evol
PMCID: 5850278
PMID: 29220515
DOI: 10.1093/molbev/msx319

[…] else being equal, quantitative assessments with BUSCO offer logical selection criteria to help focus on the most complete genomic resources available. For example, assessing 135 Lactobacillus and 35 Aspergillus genomes and comparing these with their contiguity measures and total gene counts (Materials and Methods) shows that RefSeq-designated references are not always the best available represent […]

library_books

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

2017
Genome Biol
PMCID: 5307856
PMID: 28196534
DOI: 10.1186/s13059-017-1151-0

[…] Sam3, Mmp1, Lyp1, Alp1, Can1, Dip5, Put4, and Ssy1 obtained from the Saccharomyces Genome Database [] were used as in silico probes for BlastP and in several cases, TBlastN searches in the available Aspergillus genomes at either the AspGD [] or the JGI [] databases. In addition, the homologues obtained for A. nidulans were used as in silico probes in a second BlastP search round. We have also ide […]

library_books

Sequencing and functional annotation of the whole genome of the filamentous fungus Aspergillus westerdijkiae

2016
BMC Genomics
PMCID: 4986183
PMID: 27527502
DOI: 10.1186/s12864-016-2974-x

[…] ysis could be used to find conserved regions among the genomes and to infer the probable collinearity of the assembled scaffolds. Pairwise comparisons between A. westerdijkiae and the eight sequenced Aspergillus genomes were conducted by applying the scaffolds greater than 100 kb in these genomes to the NUCmer programs (Fig. ) []. A total of 29 scaffolds from A. westerdijkiae larger than 100 kb in […]

library_books

The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia

2015
PLoS Genet
PMCID: 4595289
PMID: 26439490
DOI: 10.1371/journal.pgen.1005493

[…] ed orthologous gene clusters in the six genomes sequenced here, 10 additional Onygenales genomes, including three other pathogenic species (Histoplasma, Paracoccidioides, and Coccidioides), and three Aspergillus genomes. Using 2,062 single copy core genes present in all strains, we estimated a phylogeny of these organisms using RAxML ([]; ). This analysis strongly supports the clustering of Blasto […]

library_books

Examining the Evolution of the Regulatory Circuit Controlling Secondary Metabolism and Development in the Fungal Genus Aspergillus

2015
PLoS Genet
PMCID: 4364702
PMID: 25786130
DOI: 10.1371/journal.pgen.1005096

[…] All genome sequences and annotations for A. nidulans FGSC A4 s10-m02-r03, A. fumigatus AF293 s03-m04-r11, A. oryzae RIB40 s01-m08-r21 and A. niger CBS 513.88 s01-m06-r10 were taken from the Aspergillus Genomes Database (AspGD) []. Groups of orthologous genes (orthogroups) for these four genomes were taken from AspGD’s orthology assignments for 16 Aspergillus species, which were generated […]

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Aspergillus Genomes institution(s)
School of Medicine, The University Hospital of South Manchester (Wythenshawe), Manchester, UK

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