ASpli specifications

Information


Unique identifier OMICS_12942
Name ASpli
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format BAM
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.6.0
Stability Stable
Requirements
AnnotationDbi, methods, stats, parallel, BiocGenerics, IRanges, GenomicRanges, Rsamtools, utils, S4Vectors, BiocStyle, grDevices, GenomicAlignments, edgeR, Gviz, GenomicFeatures
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Estefania Mancin <>

ASpli in publication

PMCID: 5004807
PMID: 27575636
DOI: 10.1371/journal.ppat.1005841

[…] transcriptome analysis of denv infected and mock infected cells at 24 and 36 hours post infection were performed, and a recently developed r package for an integrative splicing analysis was used []. aspli combines statistical information from exon, intron, and splice junction differential usage to calculate differences in the percentage of exon inclusion (psi metric) and percentage of intron […]


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