ASpli statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ASpli
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Tool usage distribution map

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ASpli specifications

Information


Unique identifier OMICS_12942
Name ASpli
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format BAM
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.6.0
Stability Stable
Requirements
AnnotationDbi, methods, stats, parallel, BiocGenerics, IRanges, GenomicRanges, Rsamtools, utils, S4Vectors, BiocStyle, grDevices, GenomicAlignments, edgeR, Gviz, GenomicFeatures
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Estefania Mancin

ASpli citation

library_books

The Dengue Virus NS5 Protein Intrudes in the Cellular Spliceosome and Modulates Splicing

2016
PLoS Pathog
PMCID: 5004807
PMID: 27575636
DOI: 10.1371/journal.ppat.1005841

[…] Transcriptome analysis of DENV infected and mock infected cells at 24 and 36 hours post infection were performed, and a recently developed R package for an integrative splicing analysis was used []. ASpli combines statistical information from exon, intron, and splice junction differential usage to calculate differences in the percentage of exon inclusion (PSI metric) and percentage of intron rete […]


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