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ASprofile | Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues

Assists in discovering alternative splicing (AS) events in transcripts predicted from RNA-seq data and in comparing them across multiple conditions. ASprofile is a program that can analyze all pairs of transcripts in the sixteen tissues to determine exons included in one transcript and skipped in the other. To realize these operations, this software is composed of several tools: “extract-as”; “extract-as-fpkm”; and “collect-fpkm”.

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ASprofile forum

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ASprofile classification

ASprofile specifications

Unique identifier:
OMICS_01942
Interface:
Command line interface
Input data:
A set of gene annotations
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Software type:
Toolkit/Suite
Restrictions to use:
None
Input format:
GTF
License:
GNU General Public License version 3.0
Stability:
Stable

ASprofile distribution

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ASprofile support

Maintainer

  • Liliana Florea <>

Credits

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Publications

Institution(s)

Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA; Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA; Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA

Funding source(s)

Supported in part by the NSF award ABI-1159078 and NIH grants R01-HG006677 and R01-HG006102.

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