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OMIC
04668

Assembly Based ReAligner ABRA

It uses localized assembly and global realignment to align reads more accurately, thus improving downstream analysis (detection of indels and complex variants in particular).

Specifications

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Operating system:
Unix/Linux
Programming languages:
C, C++, Java
Computer skills:
Advanced
Stability:
Stable
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Publications

  • (Mose et al., 2014) ABRA: improved coding indel detection via assembly based re-alignment. Bioinformatics.
    PMID: 24907369

Classification

Literature

  • (Neuman et al., 2013) Analysis of insertion-deletion from deep-sequencing data: software evaluation for optimal detection. Briefings in bioinformatics.
    PMID: 22707752

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