ASSIMILATOR protocols

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ASSIMILATOR statistics

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Associated diseases

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ASSIMILATOR specifications

Information


Unique identifier OMICS_22148
Name ASSIMILATOR
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Medium
Stability No
Maintained No

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Publication for ASSIMILATOR

ASSIMILATOR in pipeline

2013
PMCID: 4285161
PMID: 24449572
DOI: 10.1002/art.38196

[…] (http://csg.sph.umich.edu/locuszoom/). bioinformatics analysis was performed using publicly available functional annotation files (http://genome.ucsc.edu/) and our own custom query sql-code (assimilator; available at http://assimilator.mhs.manchester.ac.uk/cgi-bin/assimilator.pl) ()., forty-two duplicate samples were removed after identity-by-descent analysis. there were 14 pairs […]


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ASSIMILATOR in publications

 (2)
PMCID: 4091986
PMID: 24709693
DOI: 10.1038/tpj.2014.3

[…] of the potential biological impact of our results, the most highly associated snps identified in phase ii (as well as snps in high linkage disequilibrium (r2>0.8)) were queried using the web tool assimilator (http://assimilator.mhs.manchester.ac.uk/cgi-bin/assimilator.pl) []. this facilitates collation of functional annotations from the publically available encode and ucsc genome browser […]

PMCID: 4285161
PMID: 24449572
DOI: 10.1002/art.38196

[…] modification, and open chromatin (), suggesting that these snps could influence gene transcription., proxies of rs1043099 were correlated at r2 > 0.8. results are the summary output from the assimilator bioinformatics analysis. tfbs = transcription factor binding site; hs = hypersensitive sites; faire = open chromatin by formaldehyde-assisted isolation of regulatory elements; ctcf = […]


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ASSIMILATOR institution(s)
Arthritis Research UK Epidemiology Unit, Manchester Academic Health Science Centre, The University of Manchester, Manchester, UK
ASSIMILATOR funding source(s)
Supported by Arthritis Research UK (grant no. 17752).

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