AStalavista specifications

Unique identifier:
OMICS_01943
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Toolkit/Suite
Restrictions to use:
None
License:
BSD 3-clause “New” or “Revised” License
Version:
4.0
Source code URL:
http://sammeth.net/fisheye/browse/Barna/barna.astalavista

Subtools

  • ASTA
  • VISTA
  • SCORER
  • ASTAFUNK

versioning

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AStalavista distribution

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AStalavista specifications

Unique identifier:
OMICS_01943
Restrictions to use:
None
Input format:
GTF, TXT
Output format:
GTF, ASTA
Stability:
Stable
Interface:
Web user interface
Input data:
A set of transcripts with known exon–intron structure (e.g. from mRNAs or ESTs) or a list of genes/transcripts/proteins IDs.
Output data:
A result page showing a list where each event type is depicted and its unique code in the relative-position notation is given and a graphical overview in form of a pie diagram that displays the distribution of events across the groups, considering differentially each type of simple event and pooling the others in one group.
Computer skills:
Basic

Subtools

  • ASTA
  • VISTA
  • SCORER
  • ASTAFUNK

AStalavista support

Documentation

Maintainers

  • Sylvain Foissac <>
  • Michael Sammeth <>
This tool is not maintained anymore.

Additional information

http://sammeth.net/confluence/display/ASTA/1+-+Introduction

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Credits

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Publications

Institution(s)

Centre de Regulació Genòmica, Barcelona, Spain

Funding source(s)

Supported by a post-doctoral fellowship.

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