AStream statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

AStream specifications

Information


Unique identifier OMICS_03447
Name AStream
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for AStream

AStream citations

 (5)
library_books

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

2017
GigaScience
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] spectra, annotate isotopes and adducts, and propose compound mass as an extension to XCMS. It is easy to use in combination with this software and provides a significant reduction on data complexity. AStream [] is another R package very similar to CAMERA but using a simpler algorithm for grouping the peaks. ALLocator [] is a web-based workflow that applies centwave from XCMS for feature detection, […]

library_books

Prediction, Detection, and Validation of Isotope Clusters in Mass Spectrometry Data

2016
PMCID: 5192443
PMID: 27775610
DOI: 10.3390/metabo6040037

[…] We use the R package AStream version 2.0 [] for the detection of isotope clusters. We import the peaks which have been detected using xcms into the AStream datalist structure. We apply the function data.norm with the para […]

library_books

Analytical Methods in Untargeted Metabolomics: State of the Art in 2015

2015
Front Bioeng Biotechnol
PMCID: 4350445
PMID: 25798438
DOI: 10.3389/fbioe.2015.00023

[…] erent ionization adducts (H+, Na+, K+, …). This multiplicity often results in a high number of false positive identifications. In order to reduce false positives, several methods have been developed. AStream and Camera are methods designed to identify isotopic and adduct patterns in order to reduce data complexity in MS experiments (Alonso et al., ; Kuhl et al., ). Using these approaches, the chem […]

library_books

Computational mass spectrometry for small molecules

2013
J Cheminform
PMCID: 3648359
PMID: 23453222
DOI: 10.1186/1758-2946-5-12

[…] It also allows for the correction of mass calibration gaps [] caused by regular switches between the analyte and a standard reference compound. XCMS Online[] is the web-based version of the software. AStream[] enables the detection of outliers and redundant peaks by intensity correlation and retention time, as well as isotope detection. MetSign[] provides several bioinformatics tools for raw data […]

library_books

A Guideline to Univariate Statistical Analysis for LC/MS Based Untargeted Metabolomics Derived Data

2012
PMCID: 3901240
PMID: 24957762
DOI: 10.3390/metabo2040775

[…] ent detection of adducts (Na+, K+, NH3, etc), isotopes, or doubly charged ions that greatly inflate the number of detected peaks. Several recently launched open-source algorithms such as CAMERA [] or AStream [], and commercially available software such as Mass Hunter (Agilent Technologies) or Sieve (Thermo Scientific), are capable of filtering redundancy by annotating isotopes and adduct peaks, an […]

Citations

Looking to check out a full list of citations?

AStream institution(s)
Grup de Recerca de Reumatologia, Institut de Recerca de l'Hospital Universitari Vall d'Hebrón (Univ Autònoma de Barcelona), Barcelona, Spain

AStream reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review AStream