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Protocols

AT_CHLORO specifications

Information


Unique identifier OMICS_03530
Name AT_CHLORO
Restrictions to use None
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana

Publications for AT_CHLORO

AT_CHLORO citations

 (7)
library_books

A comprehensive proteomic analysis of elaioplasts from citrus fruits reveals insights into elaioplast biogenesis and function

2018
PMCID: 5802726
PMID: 29423236
DOI: 10.1038/s41438-017-0014-x

[…] detected peptides in two bio-replicates, were identified from purified elaioplasts. The raw data obtained from the elaioplast proteins were refined by searches against five plastid databanks (Plprot, AT-CHLORO, SUBA, PPDB, and Uniprot) and by three targeting predictors (WoLF PSORT, Predotar, and Target P). Based on the chosen criteria for plastid-localized proteins (Materials and Methods), an inve […]

call_split

Proteomic Insight into the Response of Arabidopsis Chloroplasts to Darkness

2016
PLoS One
PMCID: 4854468
PMID: 27137770
DOI: 10.1371/journal.pone.0154235
call_split See protocol

[…] in sequence alignment method. The gene numbers were derived from Arabidopsis TAIR database (http://www.arabidopsis.org/). The localizations of the proteins were determined through Swissprot database, AT-CHLORO database and PPDB database. The proteins were classified according to UniProt-GOA database, InterProScan software, and KEGG database.The mass spectrometry proteomics data have been deposited […]

library_books

Redirecting the Cyanobacterial Bicarbonate Transporters BicA and SbtA to the Chloroplast Envelope: Soluble and Membrane Cargos Need Different Chloroplast Targeting Signals in Plants

2016
Front Plant Sci
PMCID: 4770052
PMID: 26973659
DOI: 10.3389/fpls.2016.00185

[…] eins. It was reasoned that ideal putative candidates should have several TMDs and localize in the IEM. A list of A. thaliana IEM-localized proteins was built using the chloroplast proteomics database AT_CHLORO (). This list was curated to only include IEM proteins which had 10 or more TMDs, and a predicted cTP. The following eight proteins possessed both these attributes: AtPLGG1, AtHP59, AtNTT1, […]

library_books

A Split Ubiquitin Yeast Two Hybrid Screen to Examine the Substrate Specificity of atToc159 and atToc132, Two Arabidopsis Chloroplast Preprotein Import Receptors

2014
PLoS One
PMCID: 3988174
PMID: 24736607
DOI: 10.1371/journal.pone.0095026

[…] say (-3). Overall, the two screens revealed a total of 35 unique putative prey proteins that interacted with Toc159G ( and ). Using information available in the Plant Proteome DataBase, PPDB and the AT_CHLORO database , prey proteins were confirmed to be plastid proteins. For those proteins that were annotated as putative plastid proteins, the presence of a predicted TP was confirmed using Chloro […]

call_split

Systematic study of subcellular localization of Arabidopsis PPR proteins confirms a massive targeting to organelles

2013
RNA Biol
PMCID: 3858439
PMID: 24037373
DOI: 10.4161/rna.26128
call_split See protocol

[…] and subcellular proteome databases: PPDB (Plant Proteome Database http://ppdb.tc.cornell.edu/), SUBA3 (Subcellular location database for Arabidopsis proteins http://suba.plantenergy.uwa.edu.au/), and AT_CHLORO (http://www.grenoble.prabi.fr/at_chloro/). […]

library_books

New Putative Chloroplast Vesicle Transport Components and Cargo Proteins Revealed Using a Bioinformatics Approach: An Arabidopsis Model

2013
PLoS One
PMCID: 3613420
PMID: 23573218
DOI: 10.1371/journal.pone.0059898

[…] strengthen the achieved data ().Proteins indicated by ARAMEMNON to have an unknown function were confirmed to have transcripts (cloned cDNA or cognate EST) using TAIR (http://www.arabidopsis.org).The AT_CHLORO database (http://www.grenoble.prabi.fr/at_chloro) was used to find information on experimental support for the proteins’ localization in different sub-fractions of the chloroplast () . As a […]

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