ATACseqQC specifications

Information


Unique identifier OMICS_18142
Name ATACseqQC
Alternative name Assay for Transposase-Accessible Chromatin sequencing Quality Control
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.4.2
Stability Stable
Requirements
limma, stats, grid, graphics, BiocGenerics, IRanges, GenomicRanges, utils, testthat, S4Vectors, GenomeInfoDb, Biostrings, rtracklayer, BiocStyle, GenomicAlignments, BSgenome, BSgenome.Hsapiens.UCSC.hg19, ChIPpeakAnno, knitr, KernSmooth, TxDb.Hsapiens.UCSC.hg19.knownGene, trackViewer, motifStack, Rsamtools(>=1.31.2), R(>=3.4), randomforest, MotifDb, GenomicScores, preseqR, phastCons100way.UCSC.hg19
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Jianhong Ou <>

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