ATACseqQC statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ATACseqQC
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ATACseqQC specifications

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Unique identifier OMICS_18142
Name ATACseqQC
Alternative name Assay for Transposase-Accessible Chromatin sequencing Quality Control
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.4.2
Stability Stable
Requirements
limma, stats, grid, graphics, BiocGenerics, IRanges, GenomicRanges, utils, testthat, S4Vectors, GenomeInfoDb, Biostrings, rtracklayer, BiocStyle, GenomicAlignments, BSgenome, BSgenome.Hsapiens.UCSC.hg19, ChIPpeakAnno, knitr, KernSmooth, TxDb.Hsapiens.UCSC.hg19.knownGene, trackViewer, motifStack, Rsamtools(>=1.31.2), R(>=3.4), randomforest, MotifDb, GenomicScores, preseqR, phastCons100way.UCSC.hg19
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Jianhong Ou

ATACseqQC citation

library_books

ATACseqQC: a Bioconductor package for post alignment quality assessment of ATAC seq data

2018
BMC Genomics
PMCID: 5831847
PMID: 29490630
DOI: 10.1186/s12864-018-4559-3

[…] ough some tools have been adopted or developed for quality control and analysis of ATAC-seq data in the past years (see Introduction and Additional file : Table S1), to the best of our knowledge, our ATACseqQC package provides the most comprehensive and integrated set of functionalities for both quality assessment and preprocessing of aligned ATAC-seq data for further downstream analysis. Besides […]


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