AtCAST specifications

Information


Unique identifier OMICS_10272
Name AtCAST
Alternative name Arabidopsis thaliana: DNA microarray Correlation Analysis Tool
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 4.0
Stability Stable
Registration required Yes
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana

Maintainer


  • person_outline Yukihisa Shimada <>

Publications for Arabidopsis thaliana: DNA microarray Correlation Analysis Tool

AtCAST in publications

 (3)
PMCID: 4588574
PMID: 26419335
DOI: 10.1038/srep14476

[…] information to provide information useful for analysis of gene functions. many tools for biological data mining, such as co-expression analysis (e.g., atted-ii), transcriptome network analysis (atcast), and prediction of transcriptome dynamics in natural conditions, depend on the availability of large-scale transcriptome data., plant growth and development depend on phytohormone-mediated […]

PMCID: 4368578
PMID: 25793732
DOI: 10.1371/journal.pone.0119724

[…] the relationship between these experiments., for the comparison of gene expression profiles between this rnaseq analysis and dna microarray experiments, we used the dna microarray analysis tool, atcast (http://atpbsmd.yokohama-cu.ac.jp/cgi/network/home.cgi) []. rnaseq data (wt vs. max1-1) was used as query data. experiments showing correlations (|spearman’s correlation coefficient| > 0.3) […]

PMCID: 3233218
PMID: 22156726
DOI: 10.1093/pcp/pcr153

[…] and scopnet, at the virtual seed web resource (http://vseed.nottingham.ac.uk/), are genome-wide network models of transcriptional interactions in dormant and germinating arabidopsis seeds (, ). atcast (arabidopsis thaliana: dna microarray correlation analysis tool, http://atpbsmd.yokohama-cu.ac.jp/cgi/network/home.cgi) is a unique information resource that combines multiple arabidopsis […]


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AtCAST institution(s)
Plant Biotechnology Division, Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan

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