AtcisDB specifications

Information


Unique identifier OMICS_26227
Name AtcisDB
Alternative name Arabidopsis cis-regulatory element database
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana

Maintainer


  • person_outline Alper Yilmaz

Publications for Arabidopsis cis-regulatory element database

AtcisDB citations

 (2)
library_books

Genome scale analysis of regulatory protein acetylation enzymes from photosynthetic eukaryotes

2017
BMC Genomics
PMCID: 5499015
PMID: 28679357
DOI: 10.1186/s12864-017-3894-0

[…] ce information. PFAM (http://pfam.xfam.org/), PROSITE (http://prosite.expasy.org/), and Additional file for all protein structure data. Additional file for all subcellular localization information. AtCisDB (http://arabidopsis.med.ohio-state.edu/AtcisDB/), PLACE (https://sogo.dna.affrc.go.jp/) and Additional file for all promoter element data. Lastly, data involving gene expression comparison be […]

library_books

Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

2011
BMC Genomics
PMCID: 3126783
PMID: 21635767
DOI: 10.1186/1471-2164-12-286

[…] o control FDR. Only putative binding sites predicted by both tools were retained for subsequent analysis. To ascertain the predictive performance, detected motifs were compared with curated motifs in AtcisDB and AGRIS databases [,]. Sequence logos for the predicted motifs for a TF binding profile were created with WebLogo []. […]

AtcisDB institution(s)
Department of Plant Cellular and Molecular Biology and Plant Biotechnology Center, The Ohio State University, Columbus, OH, USA; School of Electrical Engineering and Computer Science, Ohio University, Athens, OH, USA
AtcisDB funding source(s)
Supported by National Science Foundation (MCB-0418891); and National Institutes of Health (5 T32 CA106196-05).

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